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Heatmap: Cluster_29 (Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
- -6.36 2.59 2.09 1.73 1.25 -7.4 - - - - -7.14 - - - -
- - -3.32 - - - -3.41 - 3.56 2.01 - - - - - -
- - 1.23 1.32 -0.01 -0.09 -2.14 1.08 0.32 2.16 -0.81 -1.91 - -3.23 - -2.26
- - -2.71 - -1.58 -0.16 -3.38 3.86 - - - - - - - -
- - - - - - - - - - - - - - - -
- - 0.21 0.02 1.39 2.73 1.95 -5.98 - - -1.64 -1.42 - - - -
- - 1.56 1.47 2.38 1.68 0.79 - - - - -2.66 - - - -
- -5.46 2.39 1.19 1.24 1.92 -0.89 -3.57 -4.73 -7.25 -0.3 -0.28 - - - -
3.11 - -0.04 - 1.1 - 2.1 - - - - - - - - -
3.29 -4.69 -5.58 - 0.82 0.87 0.79 -0.44 - -4.91 -4.87 - - - - -
- - - - - - - 1.28 - - - - - 3.76 - -
- - - 3.48 2.27 - - - - - - - - - - -
- 4.0 - - - - - - - - - - - - - -
-2.78 0.74 0.84 -1.39 - 3.15 1.02 -2.48 - - - -0.13 - - - -
- 4.0 - - - - - - - - - - - - - -
- 3.03 - - - - - 2.97 - - - - - - - -
- 3.69 - - - - - 1.64 - - - - - - - -
- - - - - - - - - - - - - - - -
-1.05 - -0.18 1.16 - 3.25 - 1.53 - - - - - - - -
- - 2.85 0.61 0.37 - 2.58 - - - - - - - - -
-7.98 -4.56 0.41 0.75 -0.39 2.31 -1.71 -4.88 -7.61 -5.97 1.62 1.92 - -7.37 - -
- - 2.48 2.53 -0.5 0.09 0.5 -1.69 - - -3.3 -0.01 - -4.14 - -
- -4.96 -2.11 -2.63 -3.78 -3.61 -2.18 -3.25 2.46 2.94 -0.08 -0.08 - - - -
-7.47 - 1.54 -0.38 1.01 -0.86 -4.08 -4.24 -2.96 -5.19 1.37 2.78 - - -6.11 -
- 4.0 - - - - - - - - - - - - - -
- - - - - - - - - - - - - - - -
1.33 3.38 - - 0.78 0.43 - - - - - - - - - -
- - - - - - - - - - - - - - - 4.0
- -3.91 -4.37 - 1.73 -1.6 3.35 -3.22 - - -3.71 0.77 - - - -2.58
3.26 2.49 -0.35 - - - - - - - - - - - - -
3.12 2.54 -0.21 -0.63 - - - - - - - - - - - -
-5.47 - -1.85 - -1.07 -1.69 3.08 1.15 - - -1.98 2.0 - - - -
- - - - 4.0 - - - - - - - - - - -
1.37 - -0.07 1.59 0.43 0.74 2.49 -6.05 - - -2.72 -1.82 -1.48 - - -
- 3.46 - - - - - - - - - - - 2.31 - -
- - - - - - - - - - - - - - - -
- 3.05 - - - - - 2.95 - - - - - - - -
- 2.69 - - - 3.25 - - - - - - - - - -
1.52 3.71 - - - - - - - - -4.27 - - - - -
- 3.9 - - - - - - - - - - - - 0.04 -
- - - - - - - - - - - - - - - -
- 3.97 - - - - - -1.43 - - - - - - - -
-0.27 - 2.96 - - - 0.96 - - - - - - 2.44 - -
- - 2.43 2.21 -1.49 1.3 - - - - -1.36 1.12 - - -0.73 -
-5.41 - 1.89 1.53 2.89 0.76 -4.42 -7.02 -6.71 - -4.02 -2.68 - - - -
- - - - - - - - - - - - - - - -
-5.48 - 1.77 1.95 1.38 2.33 -3.88 -5.4 -5.31 -4.25 -1.23 -1.16 - -8.06 -5.99 -
- 4.0 - - - - - - - - - - - - - -
- - -1.4 -2.38 -0.5 -3.75 -2.39 -2.85 2.59 2.6 0.81 -1.43 - - - -2.93
- - 3.09 -0.11 0.94 2.06 -2.44 -3.87 - - - -2.18 - - - -
- - - - - - - - - - - - - - - -
-5.73 -10.51 2.15 2.42 1.53 1.01 -5.57 -8.55 -7.82 -7.13 -0.49 -0.86 - - - -
- - - - - - - - - - - - - - - -
- - 0.34 0.67 0.46 2.89 - - - - - - - - - 2.12
- - 0.1 1.51 2.73 -0.29 1.9 -6.3 - - -1.62 -0.82 - - - -
- - - - - - - - - - - - - 2.43 - 3.41
- - 1.01 -0.63 3.37 1.59 - - - - - - - - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.