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Heatmap: Cluster_192 (Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019))

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View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
-1.22 -2.34 -1.81 -0.92 -1.19 -1.66 1.3 0.61 -0.16 -1.33 -0.4 -2.23 1.3 0.9 0.28 1.01
-6.85 - - - - - -10.89 -4.02 -7.65 - - - 2.59 1.92 1.01 2.03
-6.63 - - -10.96 -9.58 -11.33 -10.97 -2.96 -9.72 - - -10.73 2.38 1.96 1.6 1.9
-4.16 -3.22 -3.48 -2.54 -1.89 -2.52 0.43 -1.09 0.86 -0.91 0.33 -1.92 1.84 0.79 -0.71 1.82
-2.9 -2.19 -0.8 -0.24 -0.15 -0.8 1.12 0.54 -2.74 -3.92 -3.24 -5.67 1.39 0.95 0.6 1.45
-0.88 -0.57 -0.3 -0.22 -0.26 -0.49 0.83 0.17 0.86 0.87 0.55 0.5 -0.55 -0.84 -1.26 -1.1
-0.86 -0.34 -0.53 -0.06 0.03 -0.61 1.21 0.13 -1.64 -1.68 -0.44 -0.62 1.16 0.72 -0.89 0.58
-1.08 -2.97 -2.55 -2.16 -3.08 -2.18 1.55 1.5 0.67 1.92 0.31 -0.5 -1.13 -1.16 -1.77 -1.36
0.29 0.43 -1.9 -3.97 -2.22 -1.89 -1.52 -0.04 0.31 1.23 -2.04 -3.39 1.21 1.39 0.11 0.42
-3.97 1.11 -2.21 -2.71 -1.69 -1.63 -2.08 -1.79 - - -5.51 -4.38 2.16 2.13 0.96 0.49
-3.23 - - -6.94 -8.13 -8.3 -3.32 -1.03 - - - -7.71 2.22 2.79 -1.47 1.74
-0.48 -2.72 -5.0 -5.26 -3.79 -3.51 -2.27 -0.21 -4.8 - -3.26 -2.91 2.17 1.72 1.0 1.91
-3.32 -1.41 -0.46 0.23 -3.1 -3.56 0.07 1.55 1.45 2.15 0.27 -0.74 -2.26 -3.25 -4.99 -2.85
-2.83 0.72 -5.06 -6.31 -0.57 -1.12 -0.07 -2.37 -4.06 -2.31 -1.33 -1.68 1.95 1.76 0.63 1.09
-3.31 -3.01 -7.01 -5.14 -10.34 -8.18 -11.14 -10.8 1.73 1.12 -0.65 -3.53 1.7 1.21 0.56 1.32
-6.84 -5.1 -6.81 -9.17 -7.38 -8.54 -4.84 -2.72 -9.93 -7.87 -0.25 -0.37 2.3 2.12 0.69 1.71
-1.17 -7.51 -2.6 -1.86 1.08 0.23 -2.2 0.99 -0.9 -0.91 -0.67 -0.24 1.35 1.24 0.25 -0.03
-0.38 -2.08 -0.85 -0.45 -0.7 -0.43 0.63 -0.79 -0.35 0.11 0.99 0.51 0.66 0.45 -0.82 0.53
-0.49 -1.43 -4.37 -3.69 -3.07 -1.69 -0.92 1.97 1.55 1.62 -0.62 -1.94 0.08 -0.57 -2.08 0.06
-4.09 -2.95 -4.91 -4.79 -2.95 -2.6 -2.75 -2.5 -7.73 -7.67 -4.46 -4.04 2.72 2.27 -1.94 1.74
0.69 -1.1 -4.07 -2.88 -2.18 -3.61 -2.67 0.94 0.87 0.88 -2.39 -1.57 1.1 1.29 -0.7 0.95
- - - - - -3.03 -4.08 0.73 - - - - 1.96 3.15 - 0.49
1.04 -1.75 -6.35 -8.24 -4.65 -4.98 -6.44 -5.14 -9.57 - - -7.99 2.12 2.21 -1.23 2.04
-2.44 -7.34 -2.9 -3.19 -1.29 -2.54 -0.68 -0.77 -5.29 - -5.19 -3.12 1.78 2.06 1.51 1.66
0.66 0.05 -6.56 -5.23 -2.73 -2.96 -3.02 0.16 -6.0 -3.94 -4.32 -2.49 1.98 1.75 0.82 1.3
1.17 -1.59 -2.49 -2.39 -3.03 -2.09 -0.82 0.64 0.51 1.45 -0.06 -0.53 0.4 0.27 -0.49 0.6
-1.87 -1.69 -0.9 -1.06 0.16 0.31 0.62 -3.68 -4.43 -4.77 2.52 1.74 -1.4 -1.71 -2.79 -1.27
-2.98 2.94 -1.35 -1.4 -2.22 -0.78 0.4 0.51 0.42 0.26 -1.9 -1.91 -1.61 -2.3 -5.79 -1.86
-6.02 -2.11 -4.88 -4.09 -3.66 -2.97 -3.74 -4.41 -6.14 -9.25 -2.97 -3.28 2.41 2.33 0.85 1.55
-1.8 -0.83 2.23 0.32 0.42 -0.31 1.69 -0.85 -3.69 -2.88 -0.56 -0.63 -0.65 -1.34 -2.25 -0.99
0.22 0.15 -0.64 -0.23 -0.22 -0.14 0.89 -0.76 0.16 -0.3 0.57 -0.02 0.39 -0.33 -1.15 0.07
-0.01 -0.83 0.61 0.44 0.22 -1.25 0.14 0.09 -0.24 -0.19 -0.99 -0.59 0.62 0.71 -0.43 -0.01
- - -7.92 - -2.12 -2.16 0.6 0.36 -0.04 -1.37 -0.24 -2.03 1.81 1.37 0.85 1.26
0.61 0.06 -0.14 -0.53 -0.24 0.12 -0.31 -0.85 -0.84 -0.77 -0.71 -0.45 0.73 0.82 0.11 0.62
-3.23 -3.71 -1.89 -2.79 -2.62 -1.41 -1.89 -0.55 - - -4.7 -3.41 2.2 2.23 0.88 1.4
0.05 2.3 -4.13 -4.49 -3.11 -2.81 -3.77 -2.64 -4.95 -4.72 -4.54 -5.15 1.78 1.7 -1.05 1.1
-4.55 -7.04 -3.45 -3.44 -3.44 -4.04 -4.68 -0.36 0.59 0.23 2.06 -0.62 1.12 1.59 -1.88 0.88
-5.42 -6.85 -4.49 -4.33 -2.91 -2.17 -4.33 -1.48 - - - -4.1 2.37 2.65 -0.12 1.44
-2.1 -1.34 -1.8 -1.15 -3.25 -0.78 -2.36 -1.67 - - -7.54 -3.84 2.41 2.34 -0.51 1.2
1.11 -1.26 0.6 0.26 1.3 -1.08 -2.55 2.04 -4.55 -3.19 -2.52 -2.28 -0.05 0.16 -1.37 -1.07
-0.76 -4.13 -2.39 - -4.06 -3.23 -1.17 -1.43 - -4.57 -3.54 -4.64 2.24 2.03 0.16 2.02
-0.62 -1.78 -0.5 -0.24 -1.52 -0.73 -0.82 -0.31 -2.44 -2.19 -2.84 -2.68 1.61 1.79 0.87 1.1
-0.98 -1.58 -0.26 0.16 0.44 1.11 -0.11 -0.36 -1.39 -1.92 -0.26 -1.16 1.16 0.72 -0.56 0.58
-5.67 -2.08 0.83 0.53 0.01 -1.3 1.24 1.7 -4.52 -5.17 1.04 1.36 -1.71 -2.19 -3.71 -2.32
-1.23 -0.11 0.25 -0.43 0.85 1.4 -1.01 -2.09 -2.58 -2.49 -1.85 -1.02 0.8 1.31 -0.03 0.31
0.81 -0.71 -1.35 -0.06 -1.07 -1.2 0.82 0.84 -3.4 -3.47 -0.36 -0.52 1.2 1.01 -1.08 0.46
0.07 -0.9 -3.51 -4.76 -6.29 -6.45 -1.8 -0.52 0.06 -0.83 -1.89 -3.15 1.89 1.47 1.03 1.48
-6.4 -5.2 0.19 0.28 -0.52 -0.46 0.11 -1.86 -5.65 -3.59 1.22 1.22 1.02 0.76 -1.34 0.96
0.18 -1.34 -2.89 -2.21 -1.98 -2.06 1.02 -0.3 0.43 -1.07 -0.07 -2.25 1.45 0.79 0.37 1.03
- - -5.06 -6.42 -6.05 -7.21 0.94 0.32 -0.24 -1.12 -0.37 -2.04 1.84 1.34 0.37 1.6
-6.76 -5.28 - - -2.1 -2.25 1.18 -0.21 -0.91 -0.99 -0.13 -1.15 1.89 0.92 0.53 1.57
-0.25 -1.3 -1.63 -1.47 -1.6 -1.85 0.71 -0.17 0.35 -0.3 0.51 -0.77 1.12 0.85 0.32 0.7
-2.05 -7.31 -4.26 -4.7 -3.94 -3.24 -2.58 -1.08 - - -7.61 -3.6 2.29 2.48 -0.17 1.77
-0.29 -1.39 -2.88 -1.44 -1.24 -2.37 0.13 -0.24 1.77 1.21 -0.25 -1.75 0.74 -0.21 -0.99 0.88
0.86 0.0 -3.03 -2.64 -1.88 -2.27 1.14 -0.54 1.37 -0.21 -0.33 -2.39 0.61 0.07 -0.27 0.75
-0.13 -0.36 -4.34 - 0.1 -0.46 0.94 -0.07 -5.23 -6.5 -4.14 -4.57 1.65 1.12 0.35 1.52
1.78 -1.81 -0.53 -0.81 -0.73 -0.84 -0.99 -1.43 -3.56 -4.23 -4.2 -2.3 1.25 1.28 0.42 1.29
-2.45 0.23 -2.71 -2.62 -2.45 -2.51 -1.7 -0.75 2.08 1.17 -1.55 -2.01 1.19 0.49 0.16 0.26
-4.69 -5.33 -7.6 - - -4.83 - -5.67 - - - -7.04 2.17 2.43 1.39 1.75
-1.19 -3.99 -0.91 -1.23 0.37 -0.01 -0.45 -0.09 0.51 -0.23 -0.4 -1.37 1.45 0.59 -0.28 1.06
-7.65 -6.81 0.95 0.96 1.97 0.3 -1.09 -0.91 -0.61 -0.66 0.09 0.35 -0.1 -0.41 -2.98 -0.91
-3.22 -7.43 -4.07 - -3.28 -3.0 - -4.48 - - -5.2 -6.31 2.29 2.73 0.41 1.42
0.23 0.6 -2.39 -2.39 -0.99 -1.29 -0.67 -3.2 -0.39 -1.72 -1.38 -3.65 1.79 1.06 0.06 1.66
0.64 0.24 -1.56 -1.28 -0.29 -1.25 0.6 -0.67 -0.2 -0.18 -0.62 -1.43 1.36 0.09 -1.17 1.19
0.14 -1.83 -0.43 0.05 0.45 0.21 0.04 -0.17 0.57 0.35 -0.46 -1.82 0.66 0.13 -1.01 0.57
-0.72 -0.08 -0.19 -0.92 -0.46 -0.79 1.35 0.26 0.14 0.18 -0.22 -0.04 0.46 -0.13 -1.26 0.28
-1.58 -2.22 -1.45 -1.46 -0.58 -0.57 -4.9 -3.01 -4.58 - -3.89 -3.27 1.85 2.14 1.18 1.44
-4.9 -6.4 1.26 0.6 1.78 -0.68 0.57 0.7 -1.22 -1.19 -0.63 -0.63 0.2 -0.43 -3.52 -0.45
1.81 3.55 -6.71 -5.92 -9.04 - -5.75 -5.31 -6.77 -5.61 -3.99 -5.68 -2.28 -3.03 -3.7 -2.1
-0.68 -0.19 -0.94 -1.23 -1.23 -1.11 0.91 0.04 0.98 -0.01 -0.37 -1.91 0.95 0.29 -0.14 0.75
-1.58 -2.03 -3.55 -3.54 -4.74 -2.32 - -5.52 - - -5.2 -2.98 2.23 2.22 0.34 2.07
-0.75 3.63 -9.25 - -7.12 -6.47 - -1.97 -0.72 -0.41 - - -1.02 -1.04 -4.37 -1.33
-4.38 -5.46 -7.2 - - - 1.42 0.65 - - - - 2.11 1.22 0.66 1.78
-3.85 -3.05 1.17 0.89 1.38 0.97 1.56 -0.88 -3.62 -4.02 -0.8 -0.7 0.04 -0.49 -2.18 -1.47
-0.83 0.44 0.02 -0.15 0.01 -0.68 0.82 -0.44 -1.95 -3.52 -2.07 -3.08 1.29 0.79 0.24 0.98
-0.42 -0.97 0.48 0.53 0.84 0.15 1.38 -0.98 -0.01 -0.78 -0.07 -0.54 -0.3 -0.25 -1.65 -0.51
- -1.42 -6.63 -5.15 -6.04 -4.48 -3.04 2.58 2.77 1.23 -5.56 -4.64 -3.75 -3.47 - -4.62
-1.41 -3.99 -5.41 -6.49 -5.0 -4.94 -2.25 -0.79 -2.94 -2.07 -2.25 -3.8 2.25 2.3 0.05 1.73
0.84 1.37 -3.6 -3.25 -0.24 0.12 -1.53 0.36 0.32 0.73 -1.28 -2.59 0.49 0.21 -0.92 0.38
-1.81 -0.34 -1.48 -1.57 -1.86 -0.25 1.79 -0.11 0.59 -0.73 1.26 -0.52 0.5 -0.68 -1.42 0.15
-5.48 -7.23 -0.99 -1.18 -1.54 -0.36 -0.48 1.59 -4.57 -3.51 0.03 -1.46 1.56 0.78 0.34 1.45

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.