Heatmap: Cluster_103 (Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
-1.23 -1.17 -2.84 -3.33 - - -0.76 -1.0 - - - - 1.86 2.25 1.63 1.21
-3.07 2.09 -1.69 -2.81 -0.82 0.19 0.65 -2.33 -4.44 -3.96 -2.23 -1.79 1.07 1.66 0.61 -1.81
-2.45 -6.88 -4.3 -4.97 -2.09 -1.23 -6.97 -3.12 -3.55 -0.75 -3.63 -3.03 1.76 2.66 1.08 1.16
-1.31 -0.83 -3.29 -3.15 -2.31 -2.68 -0.42 -1.89 -2.24 -2.06 -1.85 -0.76 1.73 2.03 1.24 1.25
0.73 0.2 -0.91 -1.8 -0.86 -0.57 0.15 -0.89 -0.25 -0.81 -0.15 -0.15 0.3 0.79 1.14 0.16
1.25 2.17 -3.29 -2.1 -2.44 -1.51 -1.22 -1.71 -5.43 -2.96 -2.93 -2.33 0.43 1.46 -0.14 1.02
-5.29 -2.99 -6.34 -4.9 -3.76 -3.43 -1.93 -3.6 -2.53 -3.04 -4.61 -4.36 2.25 2.66 0.72 1.13
-0.24 -0.51 -0.23 -0.61 -0.24 1.24 -0.31 -1.61 -1.95 -2.4 -0.72 -0.44 0.79 1.49 -0.14 0.44
-1.12 -9.78 -3.42 -3.59 -3.87 -3.45 -2.11 -2.4 - - -7.58 -4.05 2.14 2.77 0.38 1.12
-4.26 1.12 -0.74 -0.54 0.77 2.87 -4.55 -0.06 -0.18 -1.23 -1.18 -1.62 -2.9 -2.02 -7.09 -6.19
0.05 -11.98 -4.46 -3.59 -5.01 -4.88 0.66 -0.48 -7.06 -7.53 -4.18 -2.29 1.58 2.29 1.28 0.92
-0.08 0.56 -0.84 -1.29 0.19 1.27 -1.02 -1.07 - - -3.85 -1.8 1.17 1.61 -1.76 1.1
-4.66 - -2.15 -1.96 -2.38 -1.57 - -7.5 - - -4.89 -4.26 1.72 2.42 2.14 0.86
-2.31 -0.55 -2.51 -2.97 -3.05 -2.93 -4.09 -2.93 -3.57 -6.31 - -4.8 1.91 2.62 0.78 1.37
-0.1 - -3.28 - 1.31 0.55 -1.34 2.88 -1.65 -2.53 -5.2 -1.5 0.1 -0.26 -3.97 -1.27
-0.58 -0.35 -0.63 -0.92 -0.28 -0.74 -1.25 -1.13 -2.59 -3.21 -2.59 -2.17 1.35 1.9 1.21 0.85
-2.92 -1.95 -1.62 -2.92 -1.28 -0.73 0.44 -2.21 -6.48 -5.85 -1.7 -2.46 1.58 2.23 1.26 1.0
-5.91 - -1.81 -1.88 -0.32 -2.33 1.27 1.3 - -7.34 0.94 2.36 -1.16 -0.11 -0.78 -0.88
-4.39 - -5.65 - - - -6.64 -4.65 - - -6.71 -6.4 1.93 3.03 0.81 1.07
-2.76 -4.47 -2.28 -2.34 -2.15 -1.63 0.81 -2.02 -2.65 -4.29 -4.67 -2.36 1.47 2.79 0.43 0.48
-6.35 - -2.97 - -4.84 -5.0 -0.87 -0.49 - - -5.88 -3.99 2.01 3.05 0.14 0.04
-2.31 -7.63 -5.84 -5.99 -4.71 -6.36 -7.74 -4.88 - - - - 2.14 2.53 0.85 1.88
-0.21 0.3 -2.03 -2.73 -1.65 -1.18 -0.69 -0.65 -0.89 -1.8 -2.04 -1.0 1.17 1.66 1.11 1.23
-6.39 -5.31 2.16 2.08 0.96 1.16 -3.18 -4.4 -4.83 -5.09 -0.07 -1.61 -0.92 -1.06 -1.71 -1.93
-3.96 -6.6 -0.23 -0.64 1.57 0.97 -3.33 -1.21 -5.16 -5.68 -0.69 0.09 0.64 1.2 0.7 0.82
0.53 -0.02 -1.47 -1.77 -0.99 -0.98 -0.08 -1.01 -0.79 -1.86 -0.93 -0.66 0.98 1.34 1.36 0.47
-4.14 -0.84 0.53 1.01 0.61 1.43 -1.97 -1.49 -2.31 -2.63 -2.9 -2.6 0.55 1.58 0.05 -0.11
0.95 -2.45 -0.49 -1.57 -2.04 -1.2 0.7 -0.5 - - - -3.93 0.59 2.11 0.4 1.39
-5.66 -0.62 0.12 -0.13 0.46 0.31 1.17 -0.69 0.02 -0.29 0.64 0.96 -0.95 0.26 -1.08 -1.66
-2.26 - -3.1 -1.6 -1.18 -1.27 -5.89 -5.3 - -4.15 -2.94 -1.17 1.97 1.61 2.01 1.49
-4.33 -1.54 -3.0 -2.2 -2.71 -2.96 -2.44 -2.09 -0.5 0.16 0.24 0.61 1.42 2.28 -1.02 1.01
- - - - - - 0.62 0.12 - - - - 1.88 1.85 1.88 1.27
- -8.55 -1.33 -0.57 0.18 -0.85 0.52 0.17 -0.43 -1.38 -0.58 -2.38 1.2 1.6 1.03 0.42
-2.81 -1.89 0.5 -0.13 0.42 0.27 -1.82 -4.25 -3.64 -5.17 -3.91 -3.82 1.19 1.96 1.42 0.36
-1.05 - -1.69 0.06 -1.55 2.52 -2.36 -2.6 -2.7 - - - -0.49 0.73 1.88 0.6
-2.42 -0.98 0.74 1.34 0.68 1.27 -0.69 -1.48 -2.7 -4.22 -1.67 -1.37 0.35 1.04 -0.18 -0.03
-3.08 -0.98 -1.49 -2.09 -1.51 -0.86 -3.67 -3.99 -7.04 -4.99 -6.95 -4.73 1.43 2.11 1.76 1.7
-0.71 -0.29 -1.54 -2.39 -1.05 -1.39 -0.31 -1.02 -2.29 -2.62 -1.38 -1.5 1.35 1.69 1.65 0.89
-5.33 - - - -6.14 -5.42 -8.75 -5.11 - - - - 2.51 2.61 1.01 1.06
-0.84 -0.02 -2.22 -3.88 -1.44 -4.15 -0.87 -2.33 -2.65 -4.29 -3.79 -4.36 1.84 2.53 0.33 1.06
-1.83 0.39 - -4.51 - -1.71 -4.52 -3.18 -3.27 -3.21 -2.59 -4.28 1.87 2.41 1.21 1.11
-3.6 -4.93 -3.56 -2.98 -3.85 -1.38 -2.39 -1.25 -2.2 -1.47 -4.34 -4.18 1.84 2.38 1.44 1.27
-4.13 -0.76 -6.52 -7.51 -5.14 -6.35 -6.93 -6.7 - - -9.17 -8.28 1.71 2.4 2.01 1.44
-5.25 2.54 -10.53 - - - -6.5 2.49 1.94 -0.59 - -7.61 -7.62 -6.02 - -
-0.49 -3.07 -2.32 -0.98 -0.2 -0.51 2.08 0.16 - - -4.97 -4.07 0.81 1.82 0.77 -1.1
- 0.3 - - - 0.16 - -1.05 - - - - 2.08 1.98 1.05 1.54
3.07 -0.99 -4.28 -5.53 -3.86 -3.31 0.14 -0.52 - -6.81 -0.62 -1.45 -0.25 1.15 -1.24 -0.85
0.08 -1.15 -0.29 - - -3.47 - -0.36 0.48 -0.59 -1.14 -0.7 0.6 1.71 0.87 1.62
0.83 0.76 -0.7 -2.66 -0.19 -0.06 -0.08 -1.57 -2.6 -2.95 -0.92 -0.91 0.56 1.25 0.64 0.9
-3.64 -3.36 -3.32 -3.38 -2.03 -2.3 -1.69 -2.21 -6.39 -7.33 -7.3 -6.4 1.93 2.69 1.13 1.1
-1.08 -3.27 - - - - -9.46 -1.13 - - - -8.23 1.99 2.45 1.69 1.2
-3.79 -0.63 -1.37 -1.75 -2.1 -1.81 0.82 -0.64 -0.83 -1.59 0.94 0.59 0.5 1.6 0.83 0.19
-4.31 - 1.99 1.08 0.43 0.8 -3.0 -3.58 - - -0.59 -1.7 0.16 1.34 0.55 -0.97
-7.01 -6.17 1.51 1.69 2.09 2.01 -2.13 -5.41 -2.84 -4.26 -1.69 -1.8 -2.72 -1.49 -4.33 -4.42
-6.38 - - - - - - -7.1 -6.55 -6.49 - - 2.2 2.47 1.21 1.8
-4.08 - -8.86 -7.53 -8.73 - -9.53 -5.25 - - - - 1.85 2.85 1.57 1.08
-4.08 - -4.87 0.92 -1.15 -1.45 -1.66 0.25 -4.31 - -3.21 0.89 -0.15 2.07 1.71 0.37
-1.87 -1.37 -2.56 -1.89 -1.69 -1.46 -0.62 -0.07 -0.47 -0.59 -1.11 -1.39 1.61 1.42 1.28 1.15
-1.38 0.18 -1.11 -0.95 -0.69 -0.22 -0.2 -1.02 -1.61 -1.49 -2.88 -1.82 1.2 1.98 0.74 0.73
-2.61 1.11 -2.29 -1.75 -3.16 -0.74 -5.54 -4.75 -2.65 -5.65 - -4.98 1.3 2.18 1.82 0.74
-0.12 -2.59 0.79 1.16 0.13 0.47 0.38 -0.62 0.66 -0.36 0.82 0.94 -3.3 -2.05 -3.65 -3.75
0.85 0.21 -1.93 -2.32 -2.41 -1.71 -0.5 -0.91 -1.78 -2.61 -1.76 -2.33 1.24 1.82 1.38 0.48
-3.78 1.42 -0.56 -0.58 -0.03 -1.24 1.82 -0.1 -2.05 -0.78 -0.65 0.31 -0.44 -0.03 -0.24 -0.38
-2.04 0.69 -2.79 -0.76 -1.21 3.34 -5.47 -3.21 -2.21 -1.83 -3.11 - -1.86 -1.24 - 0.51

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.