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Heatmap: Cluster_16 (Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
0.23 0.77 -1.05 -2.17 -0.84 -0.49 -1.44 -2.19 -2.88 -3.74 -3.16 -2.56 1.28 1.63 1.45 0.85
-3.45 -3.72 - -5.07 -4.54 -7.03 -6.66 -3.28 - - -6.33 -4.43 2.14 2.3 1.73 1.54
-4.14 -7.72 -7.07 -6.73 -4.93 -5.52 -5.07 -3.99 -6.51 -6.45 -5.41 -6.52 2.09 2.18 1.84 1.75
1.8 0.62 -2.92 -3.81 -2.86 -3.79 -0.92 -0.84 -2.46 -2.18 -0.99 -0.91 1.08 1.39 1.09 0.22
-5.6 - -7.11 -5.26 -6.46 -5.63 -10.58 -3.24 - - - -9.36 2.1 2.34 1.82 1.54
-2.11 -6.98 -4.12 -3.77 -2.98 -1.87 -4.43 -2.2 -8.41 - -6.14 -6.84 1.96 2.12 1.88 1.59
-3.06 -9.89 -6.36 -6.73 -7.01 -5.98 -3.75 -2.52 - - -8.31 -5.61 1.93 2.39 2.06 1.23
-5.62 - -6.97 - -7.84 -5.68 -4.18 -4.65 - -7.32 -7.29 -5.81 1.87 1.98 2.66 0.93
0.2 -0.93 -2.45 -3.54 -2.04 -1.37 0.48 -0.55 -0.23 -0.35 0.11 -0.32 1.08 0.91 1.22 0.6
0.22 -1.01 -0.72 -1.21 -0.32 -0.38 -0.07 -1.0 -0.99 -0.86 -0.5 -0.48 0.92 1.27 1.16 0.34
-0.31 -0.85 -3.33 -3.13 -3.34 -1.91 -1.42 -0.72 -2.63 -5.16 -2.42 -2.77 1.58 1.99 1.42 1.54
-3.76 -1.68 - - - - - 0.44 2.82 1.83 -4.2 -5.9 -0.11 0.17 -1.98 0.32
-9.74 -5.4 0.74 0.61 0.5 -0.29 1.49 2.09 -1.72 -0.25 -0.44 -0.06 -2.09 -2.52 -3.48 -2.9
0.2 0.36 -3.67 -4.34 -1.95 -1.9 -1.34 -1.33 0.58 -0.45 -0.91 -3.11 1.45 1.58 0.8 0.84
0.92 -0.01 1.47 0.8 0.29 -1.36 0.21 -0.24 -1.66 -2.7 -2.09 -1.17 -0.18 0.18 -0.11 -0.15
-0.21 -0.18 0.19 0.53 -0.41 0.06 -0.25 -1.1 0.24 0.29 -0.18 -0.65 0.15 0.28 0.17 0.26
0.59 -1.47 -1.92 -2.3 -1.52 -2.21 -2.12 1.07 1.39 1.12 -1.42 -1.84 0.4 0.76 0.51 -0.16
-0.94 1.49 -5.87 - -5.16 -3.74 -4.74 -9.52 - -3.92 - -6.32 1.67 2.01 1.26 1.5
-2.39 -4.93 1.35 1.42 1.82 1.94 -1.68 -2.26 -5.87 -6.81 -1.64 -1.8 -0.89 -0.11 -1.53 -2.31
-0.08 -0.5 -0.67 -1.37 -0.19 -1.12 1.0 0.79 -1.27 -1.42 -1.39 -0.13 0.61 1.02 0.38 0.38
-0.06 -0.69 -0.85 -1.7 -1.76 -1.49 -0.64 -1.33 -2.49 -3.71 -2.07 -2.08 1.41 1.66 1.58 1.22
0.52 -0.59 -1.44 -2.31 -0.72 -0.77 -0.54 -1.58 -4.62 -3.25 -3.2 -2.46 1.34 1.55 1.57 1.16
-0.53 -2.34 -1.22 -2.48 -1.23 -0.84 -0.76 -1.29 -2.85 -2.57 -1.3 -1.03 1.52 1.81 1.54 1.03
0.6 -0.9 -1.56 -2.01 -1.24 -0.83 0.02 -1.62 -3.27 -2.28 -0.86 -1.19 1.07 1.58 1.39 1.02
2.39 0.83 -0.68 -0.53 -0.83 -0.62 -2.98 -4.02 -1.32 -3.12 0.37 0.37 -0.22 -0.25 0.02 -1.21
-2.45 0.85 -2.04 -1.9 -1.11 -1.29 -2.13 -1.82 -4.57 -4.37 -1.17 -1.62 1.79 1.59 1.3 1.22
- -3.42 -3.57 -4.24 -3.71 -3.02 -3.83 -4.14 -5.58 - -5.48 -5.59 1.73 2.55 2.01 1.14
0.67 -1.31 -0.58 -1.31 -0.2 -0.18 -1.01 -1.83 -3.05 -3.7 -1.14 -0.87 1.14 1.31 1.68 0.41
-4.21 -3.98 -2.65 -3.21 -2.65 -1.43 -3.7 -2.26 -1.95 -1.61 -3.66 -5.77 1.78 2.45 1.57 1.16
-4.21 -3.86 -3.5 -3.9 -2.5 -2.85 -4.66 -5.14 -6.05 -5.99 -4.25 -5.25 1.62 2.59 2.09 0.9
0.73 -0.39 -1.28 -2.2 -0.84 -0.76 -0.75 -1.85 -2.51 -2.09 -1.07 -0.93 1.17 1.41 1.51 0.83
-1.77 -4.55 -1.79 -2.9 -1.43 -1.24 -0.35 -1.03 -3.77 -2.86 -0.94 -1.49 1.78 1.82 1.64 1.0
-0.76 -0.63 -2.28 -2.63 -1.89 -1.92 0.18 -0.72 -1.59 -2.13 -1.44 -1.52 1.66 1.71 1.12 1.17
0.64 0.82 -5.73 - -4.86 -5.02 -2.56 -8.38 - - -5.64 -3.94 1.59 1.93 1.93 0.76
-0.75 -2.06 -1.41 -1.85 -1.38 -1.78 -0.1 -0.48 -1.31 -0.53 1.46 1.01 0.6 0.8 0.96 0.16
-1.98 -4.82 -1.52 -2.59 -1.37 -1.36 0.05 -1.1 -3.88 -2.79 -0.89 -1.42 1.78 1.77 1.64 0.87
2.37 -1.7 -7.16 -7.83 -3.78 -3.02 -1.6 -1.36 -1.59 -1.03 -1.05 -1.03 0.97 1.19 1.07 0.53
-0.13 -0.24 -0.69 -1.24 -0.58 -0.3 0.63 -0.92 -0.01 -0.08 0.33 0.62 0.14 0.42 0.62 -0.1
- - -4.84 -3.92 -4.72 -5.87 - - - - - - 1.69 2.68 2.3 0.39
-0.41 -2.54 -1.27 -1.74 -4.33 -3.42 -2.11 -5.72 -1.59 -2.17 -2.58 -2.24 1.56 1.9 2.19 0.84
0.02 -0.67 -1.24 -2.45 -1.09 -0.74 -2.14 -2.19 -3.21 -3.47 -2.55 -2.61 1.41 1.79 1.77 1.13
-0.99 -1.06 0.53 0.62 0.59 0.61 -0.02 -0.0 -1.65 -1.18 -0.47 -0.36 0.27 0.46 0.24 -0.0
-0.97 -1.45 -3.0 -4.93 -3.39 -2.3 -1.23 -2.44 -3.42 -3.78 -2.52 -1.77 1.67 2.15 1.66 1.4
1.56 0.24 -0.8 -0.97 -0.18 -0.57 -1.29 -1.85 -2.39 -2.45 -1.54 -1.25 0.61 1.45 0.31 0.94
-2.13 0.26 0.69 0.75 0.91 0.84 -0.17 -1.69 -2.7 -4.23 -2.04 -2.31 0.39 0.98 0.65 -0.13
-2.78 -3.16 0.37 0.08 1.4 1.18 0.82 -0.09 -0.78 -2.22 -0.55 -0.62 -0.1 0.29 0.07 -1.16
-0.74 0.33 0.17 0.4 0.43 -0.87 0.85 0.87 -0.37 -0.6 -0.55 -0.17 -0.36 -0.3 -0.11 -0.63
-0.35 -0.2 -0.98 -2.01 -1.82 -1.59 0.57 -0.5 -0.4 -0.55 0.89 0.3 0.53 0.93 0.87 0.12
0.38 -1.09 -0.39 -0.83 -1.33 -1.58 0.16 -0.45 -1.49 -1.75 -0.75 -0.94 1.09 1.12 1.18 1.0
-0.64 -0.48 -2.17 -2.56 -1.08 -0.96 0.02 -0.07 -1.35 -2.03 -1.47 -1.29 1.4 1.61 1.24 0.88
-1.73 -2.28 -2.69 -3.28 -2.33 -2.39 -1.31 -2.02 -5.63 - -2.47 -2.58 1.9 2.14 1.26 1.71
-3.48 -7.29 -3.23 -3.18 -4.11 -4.91 -2.01 -1.72 - - - -7.12 1.65 2.45 0.84 2.22
-1.8 0.65 -2.74 -3.39 - - -3.2 -5.24 - - - -3.71 1.52 2.26 2.3 0.14
- -6.82 - - - - - - - - - - 1.31 2.11 2.89 0.81
0.81 -0.93 -1.35 -1.82 -1.35 -1.2 0.38 0.02 -0.2 -0.44 -0.34 -0.96 0.78 0.84 0.93 0.67
-2.36 -3.48 -3.78 -3.25 -3.2 -3.28 0.74 -0.66 0.09 -0.06 0.56 0.34 0.96 1.28 1.16 0.72
-1.04 - -3.01 -3.82 -1.99 -2.48 -3.17 -0.6 - - -4.8 -4.91 1.54 2.45 1.79 1.16
-2.3 -3.88 0.23 0.09 -2.31 -0.95 -5.2 -1.44 -0.26 -0.44 -3.55 -3.39 1.67 2.15 0.27 0.85
0.52 0.4 -0.47 -1.06 0.04 0.38 -0.68 -0.15 -0.13 -0.2 -1.1 -0.45 0.26 0.47 0.57 0.19
-1.64 -0.6 -2.19 -2.15 -1.57 -1.66 -2.13 1.43 2.03 2.37 -1.59 -1.19 -2.43 -1.9 -2.0 -2.07
-0.5 -1.85 -2.45 -2.39 -1.72 -1.34 -0.14 -1.41 -2.22 -2.96 -3.32 -2.42 1.61 1.96 1.55 1.1
0.9 -5.86 -1.56 -3.19 -1.56 -1.32 0.0 -0.29 -9.14 -7.49 -2.38 -1.53 1.39 1.67 1.79 0.4
- - -5.7 -4.63 -1.08 -1.34 0.04 -0.12 -4.39 -6.65 -6.62 -6.72 1.36 1.86 2.34 0.83
0.39 1.36 -0.46 -0.6 -0.24 0.15 -0.82 -0.79 -0.06 -0.54 -0.52 -0.39 0.1 0.4 0.34 -0.2
0.84 -1.32 -1.05 -1.4 -1.73 -0.99 -2.83 -2.06 -2.93 -3.31 -3.13 -3.57 0.51 1.88 1.88 1.34
0.43 -1.89 -0.71 -1.91 -0.5 -0.76 -0.64 -1.66 -3.04 -2.82 -2.18 -1.35 1.42 1.58 1.54 0.85
0.59 -1.1 -1.34 -2.31 -1.18 -1.06 -0.24 -1.16 -2.12 -1.63 -0.24 -0.59 1.31 1.32 1.31 0.76
-8.25 - - -9.43 - - - -7.9 - - - - 1.75 2.4 2.15 1.54
- - - - -5.08 - - -4.28 - - - - 2.13 2.65 1.85 0.75
-0.16 0.5 -1.65 -2.01 -1.05 -1.27 -0.23 0.1 -2.14 -3.47 -2.26 -1.49 1.13 1.61 0.84 1.26
0.15 -3.26 - - -8.19 -5.77 -6.67 -2.23 -5.16 -5.1 -3.33 -3.44 2.17 2.17 1.29 1.52
0.25 -0.67 -1.05 -1.39 -0.44 -0.13 0.24 -0.94 -1.3 -0.56 -0.19 -0.14 0.75 0.9 0.97 0.67
-1.73 - -0.87 -2.56 -3.42 -1.89 -1.95 -1.21 - - -6.47 -2.99 1.82 1.83 2.17 1.14
0.14 1.27 -0.45 -1.37 0.04 -0.03 -0.49 -1.05 -0.06 -0.23 -1.32 -0.65 0.42 0.65 0.48 0.02
-1.04 -0.24 0.36 0.32 0.54 0.14 -0.83 -1.42 -1.39 -2.09 -1.41 -1.16 0.55 1.12 0.93 0.73
-0.77 -2.0 -1.77 -5.13 -3.77 -4.49 -4.56 - - - - - 1.82 2.07 1.8 1.8
-3.93 -8.59 -0.97 -1.44 -1.57 -1.37 -4.79 -6.98 - - -7.35 -6.46 1.56 2.31 1.91 1.39
2.49 2.31 -3.65 -3.5 -3.12 -3.29 -1.06 -2.49 -4.56 -2.78 -1.57 -1.99 -0.21 0.19 -0.14 -0.52
0.07 -2.78 -1.84 -2.78 -1.84 -1.6 -0.99 -1.33 -1.7 -2.04 -2.17 -3.36 1.88 1.79 1.42 1.11
0.11 -4.18 -0.34 -2.28 0.38 0.26 0.01 -0.62 -7.25 -7.19 -1.57 -1.71 1.13 1.4 1.54 0.41
-0.82 -3.92 -0.99 -2.7 -1.92 -2.06 -0.84 -0.79 -5.24 -5.18 -2.15 -1.01 1.61 1.83 2.12 0.39
- - - -1.06 - - - -4.39 - - - - 1.65 3.07 -0.84 1.76
0.5 -0.52 -1.66 -1.52 -0.95 -0.16 0.48 -0.04 0.22 0.56 0.16 -0.84 0.13 0.64 0.43 0.18
-5.06 - 0.34 0.13 0.21 2.21 -0.36 -3.66 - - -2.99 -1.22 0.37 1.3 0.64 0.13
-2.8 -2.22 -2.47 -4.02 -2.54 -2.52 -2.08 -1.77 -5.86 -6.22 -5.15 -3.09 1.85 2.28 1.73 1.36
0.43 -1.39 -1.31 -2.03 -1.81 -1.51 0.22 -0.36 -1.79 -1.61 -0.99 -0.86 1.42 1.53 1.27 0.49
-0.74 -2.31 -0.29 -0.04 -0.5 -0.23 0.47 -0.15 -0.52 -0.1 0.72 -0.13 0.41 0.55 0.4 0.32
-5.95 - -1.74 -1.48 -0.22 -0.63 0.73 -3.6 -7.17 - -3.49 -3.18 1.48 1.93 1.93 0.55
-2.25 - - - - - - -0.17 - - - - -0.09 2.31 2.89 0.69
-0.21 -0.53 -0.18 -0.91 0.04 1.51 0.27 -2.18 -1.1 -1.86 0.37 0.67 -0.9 0.67 0.07 -0.13
-6.15 -6.64 -0.85 -0.49 -0.37 -0.04 -1.19 -1.94 -5.51 - -2.25 -1.68 1.71 1.88 1.45 1.04
0.47 0.09 -0.44 -1.3 -0.2 -0.32 0.1 -1.34 -2.25 -0.91 -0.29 -0.22 0.97 0.97 0.66 0.43
2.32 -2.05 -3.82 -5.49 -5.01 -4.01 -1.86 -1.53 -4.25 -4.7 -2.67 -3.19 1.14 1.38 1.69 0.66
0.56 0.17 -1.09 -2.4 -0.45 -0.04 -0.23 -1.24 -1.73 -3.06 -2.92 -2.55 1.27 1.51 1.34 0.33
-4.89 -5.34 -2.99 -3.56 -2.24 -2.09 -0.72 -1.93 -4.74 -4.52 -0.29 -0.31 1.77 1.88 1.42 1.55
-0.17 -3.73 -2.59 -3.63 -2.48 -1.97 -2.89 -2.28 - - -6.45 -3.9 1.74 2.1 1.8 1.5

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.