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Heatmap: Cluster_172 (Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
- - 1.93 2.4 -1.27 -0.43 1.52 1.23 - - - -0.83 - - - -
- - - - - - - - - - - - - - - -
- - 3.16 - - - - - - - 2.82 - - - - -
- 3.78 - 1.17 - - - - - - - - - - - -
- - - - - - - - - - - - - - - -
- - - -0.6 -0.85 3.79 -0.06 - - - - - - - - -
-5.05 3.42 -2.94 -2.6 -0.51 -2.83 0.22 -3.6 -0.52 -0.04 -0.78 -0.65 - - - -
- - - - - - - - - - - - - - - -
- 4.0 - - - -6.94 -8.9 - - - -8.56 -7.67 - - - -
2.53 - - 2.42 -0.11 0.73 - -0.31 - - - - - 0.58 - -
- - 1.36 1.52 2.54 1.85 -0.03 -7.82 - - -4.73 -2.98 - - - -
- - - - 4.0 - - - - - - - - - - -
- - 1.99 - - - - - 3.59 - - - - - - -
- -2.35 -6.37 -4.46 - -7.41 - -7.21 1.99 3.55 -4.71 - - - - -
- -2.28 -1.7 - - - - 3.15 - - 1.56 1.87 - - - -
2.83 3.12 - - - - - - - -2.36 - - - - - -
- - 2.61 1.64 1.99 0.3 0.58 -6.51 - - -4.05 - - - - -
- - 3.7 1.59 - - - - - - - - - - - -
0.22 - - - 2.13 - - - - - - - - 1.82 - 2.79
- 4.0 - - - - - - - - - - - - - -
- - - - - - - - - - - - - - - -
- 4.0 - - - - - - - - - - - - - -
2.19 3.52 - - - - - - - - - - - - - -
- - - - - - - - - - - - - - - -
4.0 - - - - - - - - - - - - - - -
- -9.01 0.03 -0.24 0.32 0.37 1.27 -1.67 - - 2.41 1.83 - - - -
1.97 - - - 3.59 - - - - - - - - - - -
- - -0.16 - 3.64 -0.67 -2.88 - - - -1.55 0.62 - - - -
- - -4.55 -1.63 0.17 -2.78 -2.63 3.63 -1.39 -0.67 -1.42 -1.18 - - - -
-3.62 -3.96 1.93 1.81 1.59 1.86 -0.57 -0.63 - - -1.76 -1.87 - - - -
- - -3.69 - -5.9 -3.71 - -2.9 -0.86 2.91 2.7 0.15 - - - -
- - -0.16 -0.56 2.89 1.07 2.13 - - - -1.8 -1.91 - - - -
- - - - - - - - 2.38 3.43 - - - - - -
- - - - - - - - - - - - - - - -
- - - - - - - - - - - - - - - -
- - - - - - - - - - - - - - - -
- - - - - - - - - - - - - - - -
- - - - - - - - - - - - - - - -
4.0 - - - - - - - - - - - - - - -
3.3 -1.14 - 1.29 - - - 1.69 - - - - - - - -
- - - - 2.06 - 2.26 - - - - - - - 2.82 -
- - 0.33 -2.53 -0.49 -0.75 1.48 1.33 0.07 1.49 0.97 1.1 - - - -
- - - - - 4.0 - - - - - - - - - -
- - - - - 4.0 - - - - - - - - - -
- - - 3.72 1.5 - - - - - - - - - - -
- -3.09 1.37 0.91 1.94 2.51 0.58 -8.72 - - -5.39 -1.45 - - - -
- - - - - - - -2.1 - - 2.25 3.46 - - - -
- - - 4.0 - - - - - - - - - - - -
-4.21 -3.79 2.06 2.33 1.99 0.72 0.0 -4.35 - - - - - - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.