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Heatmap: Cluster_193 (Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
-1.47 -3.23 -5.51 -6.12 -4.59 -3.37 -1.7 -2.44 -4.16 -3.4 -2.33 -2.27 1.97 2.26 1.43 1.54
1.22 -1.31 -2.24 -3.07 -2.06 -1.83 -0.03 -0.77 -3.01 -1.78 -1.25 -1.89 1.16 1.49 1.37 1.08
0.17 0.07 -1.95 -2.16 -2.13 -2.06 0.15 -0.76 -1.05 -0.91 -0.52 -0.45 1.05 1.39 1.21 0.79
0.13 -0.08 -1.98 -2.79 -2.0 -2.4 -0.63 -0.96 -2.26 -1.89 -1.89 -1.32 1.41 1.65 1.46 1.17
-0.74 -1.3 -2.87 -2.55 -2.18 -1.77 -1.25 -1.32 -4.44 -4.58 -2.59 -2.61 1.78 2.13 1.28 1.43
-0.52 0.08 -1.56 -2.52 -1.76 -2.39 -1.67 -1.4 -3.05 -4.27 -3.13 -2.42 1.67 2.0 1.46 1.11
0.69 0.49 -1.75 -2.04 -0.54 -1.15 -0.7 -1.0 -1.41 -1.99 -1.19 -1.5 1.05 1.29 1.26 0.9
0.16 -1.11 -0.82 -1.66 -0.39 -0.01 0.07 -1.35 -2.96 -2.21 -0.22 -0.22 0.97 1.36 1.05 0.76
-0.29 -1.53 -1.17 -1.44 -1.12 -0.16 -0.9 -1.18 -1.13 -1.85 -0.98 -1.73 1.45 1.39 1.29 1.22
-0.99 -6.06 -3.57 -7.0 -2.71 -2.72 -2.09 -2.07 - -7.7 -5.66 -5.18 2.13 2.18 1.55 1.45
1.1 -0.59 -1.83 -1.99 -1.54 -0.41 -1.16 -1.17 -2.11 -3.23 -0.05 -0.51 1.32 1.4 0.88 0.74
-0.18 -1.69 -1.37 -1.16 -1.3 -0.88 0.71 -0.15 -0.81 -0.63 -0.44 -0.44 1.01 1.13 0.75 0.94
-0.28 -1.25 -5.12 -4.07 -4.36 -3.4 -0.45 -0.64 -6.42 -6.94 -0.79 -2.4 1.81 2.41 -0.1 1.38
-0.39 1.03 -3.0 -3.89 -1.78 -2.52 -1.26 -1.77 -2.72 -3.04 -2.46 -2.91 1.52 1.64 1.78 0.88
1.01 -1.99 -2.09 -3.38 -2.27 -1.7 -0.8 -1.56 -2.72 -1.9 -1.06 -0.97 1.41 1.51 1.43 1.24
-2.3 -1.63 -3.65 -5.63 -3.55 -2.41 -1.01 -1.95 - - - - 2.01 2.26 1.6 1.33
-1.43 -2.9 -2.95 -3.97 -1.52 -2.33 -1.48 -0.76 -1.48 -2.01 -2.46 -2.36 1.58 1.82 1.91 1.36
-3.36 -3.11 -0.23 -0.63 1.31 -0.58 1.28 -1.66 -1.24 -1.5 -1.46 -3.57 -0.64 1.68 1.34 -0.35
-6.15 -1.39 -4.28 - -5.16 - -0.37 -0.21 1.34 0.55 0.32 0.12 -0.05 1.31 0.92 1.15
-1.39 2.87 -3.52 -4.52 -2.97 -2.73 -4.03 -2.25 -7.37 -7.9 -5.86 -3.92 0.67 0.97 1.12 0.85
2.68 - -0.51 1.17 -2.88 -2.16 -1.03 -1.67 -6.61 - -0.59 -0.18 0.54 0.7 -0.7 -2.07
-1.1 0.6 -0.88 -1.04 -0.73 0.2 -1.12 0.0 -1.39 -1.14 -2.1 -1.79 1.09 1.46 0.51 1.08
-1.13 -4.32 -1.36 -1.84 -2.6 0.08 -2.02 -4.14 -4.91 -2.71 -0.29 0.69 2.17 1.79 -0.14 0.86
0.61 0.28 -1.34 -2.11 -0.71 -0.22 0.59 -0.18 0.6 1.02 0.02 -0.59 -0.16 0.03 0.13 -0.85
-2.16 -0.14 -1.89 -4.73 -2.21 -1.93 -4.15 2.01 0.72 0.86 -3.39 -3.91 1.06 0.93 -0.17 0.59
0.37 -0.45 -0.9 -0.79 -0.99 -0.22 0.44 -0.7 -0.23 0.29 0.5 0.05 0.28 0.39 0.19 0.41
0.14 0.08 -0.21 -0.93 -0.24 0.18 -0.5 -1.46 -2.19 -2.93 -0.76 -0.18 0.67 1.03 1.11 0.84
0.25 0.04 -2.6 -2.27 -2.2 -1.96 0.67 -0.35 1.6 1.14 0.02 -0.32 -0.07 0.02 -0.65 -0.17
-0.97 0.41 -1.1 -0.81 -0.28 0.16 -0.36 -1.06 -3.03 -4.67 -1.55 -1.35 1.19 1.66 0.75 0.92
-0.51 -0.96 -2.2 -2.48 -1.6 -1.5 -1.29 -1.35 -2.0 -2.42 -1.92 -1.68 1.77 1.71 1.21 1.53
0.02 1.43 -2.59 -2.85 -1.42 -1.06 -1.08 -1.02 -0.99 -1.45 -1.15 -0.84 0.93 1.4 0.86 0.96
0.19 0.68 -0.59 -1.49 -0.72 -0.81 0.14 -0.28 -0.2 -0.52 -0.73 -0.47 0.39 0.9 0.85 0.34
0.59 0.75 -1.19 -1.4 -0.99 -0.67 0.42 -0.42 -0.35 -0.85 0.1 0.26 0.36 0.51 0.69 -0.25
-0.99 -1.27 -2.4 -3.11 -2.98 -2.89 1.67 -0.24 0.71 0.79 0.88 0.34 -0.18 0.21 0.22 -0.29
0.19 0.63 -0.28 -0.49 0.14 0.04 0.19 -0.87 -0.44 -0.79 -0.42 0.41 -0.04 0.4 0.33 0.05
1.33 -0.7 0.29 -0.52 0.11 0.22 -1.09 -1.56 -5.43 -6.56 -4.63 -3.46 0.71 1.04 1.33 0.61
-0.29 -0.61 -0.01 -0.41 -0.76 -0.79 -1.42 -2.06 -3.17 -4.22 -2.48 -2.65 1.18 1.73 1.79 0.53
-0.8 0.43 - -0.97 -4.65 - -1.86 0.29 -1.84 -1.3 -4.07 -2.59 1.22 1.39 0.91 2.1
-0.16 -0.73 -0.97 -0.93 -0.78 -0.52 -0.33 -1.05 -2.24 -2.86 -1.95 -2.47 1.29 1.52 1.33 1.2
-0.08 -0.43 -3.54 -3.62 -3.09 -3.32 -1.76 -1.68 -3.26 -3.45 -3.55 -3.65 1.5 2.03 1.97 1.08
0.2 0.1 -0.75 -1.41 -0.48 -0.57 -0.05 -0.9 -0.83 -1.04 -1.33 -0.75 0.8 1.15 1.25 0.62
-1.32 -1.37 -1.45 -4.96 -2.66 -2.21 -0.25 -0.82 - -5.24 -2.88 -2.4 1.92 2.37 0.91 0.89
0.58 -2.43 -1.0 -2.58 -1.74 -1.54 -2.52 -2.06 -6.92 -7.3 -5.41 -3.97 1.71 1.82 1.58 1.44
1.43 -0.63 -0.95 -1.75 -0.39 -0.38 -1.0 -1.33 -3.1 -3.18 -3.05 -2.69 1.01 1.21 1.28 1.11
0.49 -1.05 -0.85 -1.12 -0.59 -1.22 -6.86 -4.74 - -8.1 -9.06 -9.17 1.42 1.85 1.71 1.27
-1.24 -1.54 -2.95 -4.53 -2.51 -2.01 -0.19 -0.78 -3.37 -2.4 -1.06 -0.93 1.78 1.96 1.23 1.15
-0.11 -3.63 -1.86 -2.61 -1.31 -1.01 -0.01 0.25 -7.5 -3.74 -2.45 -1.68 1.72 1.83 1.05 0.98
-0.51 -1.27 -4.68 -5.88 -4.03 -3.64 -1.04 -0.49 -1.63 -1.92 -1.56 -2.15 1.97 1.64 1.33 1.48
2.48 0.47 -2.12 -3.16 -2.06 -2.62 -1.23 -0.4 -2.6 -3.06 -0.38 -0.12 0.41 0.54 0.17 0.29
-0.78 0.07 -1.18 -1.91 -0.74 -0.96 -0.68 -1.08 -4.0 -3.7 -2.97 -2.66 1.46 1.81 1.7 0.59
0.54 -0.44 -1.07 -1.48 -1.05 -0.42 0.01 -0.56 -0.85 -1.1 -0.54 -0.78 1.07 1.03 0.89 0.83
1.69 -0.21 -1.41 -1.9 -0.81 -0.85 -0.05 -1.19 -2.05 -1.49 -0.64 -0.76 0.88 1.04 0.67 0.5
-1.31 -0.09 - -6.12 -3.74 -2.03 -0.37 -0.22 -0.38 -0.86 -1.53 -0.75 1.43 1.59 1.43 1.03
0.26 0.4 -1.33 -2.98 -0.93 -1.05 -1.4 -2.08 -3.46 -3.62 -3.09 -1.89 1.03 1.49 2.09 0.74
0.71 -0.04 -1.15 -2.91 -1.42 -1.35 -1.04 -2.4 -2.04 -1.93 -0.8 -0.95 1.42 1.18 1.31 1.24
0.94 -1.05 -1.25 -2.36 -1.08 -0.97 -1.0 -1.69 -4.3 -4.86 -3.78 -3.16 1.45 1.63 1.43 1.26
-3.4 -3.83 -5.74 -6.17 -5.03 -3.64 -2.82 -2.66 -5.05 -3.96 -3.25 -3.58 2.05 2.43 1.47 1.49
0.74 -0.67 -2.62 -3.58 -2.62 -2.3 -1.13 -1.98 -4.07 -2.87 -1.78 -1.63 1.57 1.71 1.58 1.22
1.88 -1.24 -0.16 -0.57 -1.64 -1.97 -1.16 -0.99 -1.64 -3.97 -1.7 -2.45 1.07 1.47 0.41 0.78
0.34 1.6 -0.8 -1.09 -0.89 -0.22 0.4 -0.25 0.34 0.14 0.24 0.39 -0.66 -0.55 -1.08 -1.16
0.54 0.76 -1.66 -1.16 -0.99 -1.07 0.35 -0.3 -0.48 -0.66 0.0 0.14 0.45 0.76 0.64 -0.07
0.1 0.45 -2.45 -2.89 -2.96 -2.13 -0.6 1.07 0.73 1.12 -0.16 -0.9 0.2 0.24 0.7 -0.14
0.23 -0.22 -2.13 -2.35 -2.04 -1.78 0.23 -0.86 0.48 0.9 0.06 -0.22 0.6 0.53 0.71 0.61
-0.36 -1.85 0.12 -1.05 0.01 0.27 0.19 -1.07 -1.09 -0.9 -0.26 -0.32 0.68 0.87 0.95 0.62
-0.45 -0.86 -1.63 -2.38 -1.41 -1.14 -0.3 -1.26 -2.12 -1.46 0.31 -0.12 1.31 1.55 1.32 0.56
0.46 0.2 -2.62 -2.14 -2.07 -1.26 0.5 -0.1 -0.2 -0.82 0.13 0.01 0.47 1.13 0.4 0.72
0.82 0.84 -0.49 -0.77 -0.2 0.06 0.17 -0.55 -0.5 -0.89 -0.69 -0.15 0.11 0.51 0.28 -0.09
0.96 -3.69 -1.31 -2.52 -1.4 -1.15 -1.38 -1.61 -7.98 -10.04 -4.42 -3.16 1.48 1.72 1.46 1.52
0.17 -0.32 -0.63 -0.13 -0.32 -0.59 -0.13 0.38 1.27 0.55 -1.58 -0.92 0.17 0.19 0.08 -0.37
0.34 -1.31 -0.62 -1.71 -1.22 -1.02 -1.22 -1.8 -3.98 -4.06 -2.44 -2.2 1.54 1.9 1.49 0.81
-2.07 -6.85 -4.76 -5.25 -2.78 -3.79 0.18 1.36 -7.12 -7.65 -2.59 -1.55 1.63 1.79 1.07 1.37
0.93 0.33 -1.65 -2.36 -0.99 -0.65 -0.76 -1.6 -1.58 -0.93 -0.47 -0.58 0.84 0.97 1.18 0.98
-0.33 -0.8 -2.43 -3.08 -2.72 -2.23 0.61 -0.19 0.35 0.45 0.42 -0.33 0.64 0.9 0.87 0.62
-2.21 -1.62 0.89 0.77 1.29 1.04 -1.69 -2.88 -3.82 -2.37 1.1 1.17 -0.95 -0.39 -1.1 -0.85
-1.53 -1.91 -0.88 -1.4 -0.22 -0.76 -0.3 -0.63 -2.37 -1.92 -1.8 -1.03 1.53 1.55 1.3 1.04
- - -5.66 -5.32 -4.55 -4.1 - -3.96 - - - - 2.33 2.53 0.8 1.7
-0.59 -1.42 -0.98 -1.03 -1.19 -1.23 -0.13 -0.05 -1.11 -0.85 -0.72 -0.96 1.44 1.29 1.06 0.88
0.7 -0.75 -1.45 -2.37 -0.97 -0.67 -0.19 -1.33 -2.27 -1.18 -0.08 -0.51 1.1 1.31 1.09 0.81
-1.18 -0.8 -2.85 -3.2 -1.88 -1.95 -0.81 -1.37 -1.19 -1.26 -2.34 -1.97 1.45 1.83 1.7 1.26
-0.05 -0.3 -1.82 -1.57 -1.31 -1.04 -1.06 0.57 0.92 1.27 -1.28 -1.05 0.28 0.54 0.47 0.59
-0.97 -0.7 -1.32 -2.25 -1.03 -0.73 -1.87 -2.2 -5.07 -4.99 -3.89 -3.44 1.72 1.82 1.4 1.58
-0.13 -0.68 -0.31 -0.54 -0.18 -1.56 -2.39 -1.98 -3.27 -3.25 -4.5 -4.41 1.66 1.75 0.96 1.35
-0.35 -2.49 -3.29 -3.51 -3.45 -2.8 0.48 0.06 -4.17 -5.79 -3.08 -2.12 1.5 2.14 1.36 0.98
0.17 0.77 -3.96 -6.44 -5.06 -4.48 -7.44 -3.28 -5.19 -5.13 - - 1.77 1.93 1.4 1.59
-2.18 -4.74 -3.03 -2.94 -3.18 -2.89 -0.45 -1.2 -4.25 -3.32 -1.19 -1.52 1.71 2.13 1.69 1.17
-0.0 -1.05 -2.0 -2.48 -1.84 -1.35 0.64 -0.16 -1.16 -0.57 0.3 -0.91 0.85 1.15 0.93 1.11
0.64 1.09 -0.26 -0.35 -0.13 0.16 -0.85 -1.7 -1.49 -1.96 -2.2 -2.03 0.7 0.97 0.97 0.24
-0.48 -1.52 -3.08 -4.33 -1.59 -2.29 -1.49 -1.17 -4.1 - -2.59 -2.52 1.77 2.07 1.73 1.07
1.0 0.32 -1.52 -1.51 -0.95 -0.61 -0.2 -0.89 -1.3 -1.72 -1.46 -1.41 1.14 1.37 0.68 0.71
-0.74 -1.54 -2.73 -2.93 -2.03 -1.42 0.66 -0.41 -1.4 -0.98 0.04 -0.77 1.16 1.63 1.09 0.89
-0.21 -2.1 -1.95 -1.68 -1.58 -1.06 0.45 -1.02 -1.44 -1.35 0.05 0.11 1.07 1.41 1.01 1.01
-1.65 -9.01 -2.57 -3.27 -3.01 -2.65 -1.93 -1.32 -8.15 -10.09 -4.88 -4.12 2.12 2.56 1.49 0.35
0.28 1.41 -1.13 -1.8 -0.86 -1.08 0.06 -1.0 -0.94 -1.18 -0.44 -0.27 0.49 0.86 0.77 0.48
0.76 -0.09 -2.96 -2.97 -1.6 -1.56 0.01 -0.42 -0.68 -1.13 0.29 -0.54 1.04 0.96 0.95 0.81
1.14 -2.71 -1.77 -2.19 -2.41 -1.93 -2.26 -1.18 - -5.57 -3.94 -2.83 1.51 1.79 1.74 1.11
-8.44 - -4.03 -3.26 -5.2 -4.21 -3.46 -3.27 -4.83 -6.38 -3.49 -3.83 2.15 2.31 1.54 1.59
0.95 -0.97 -0.66 -1.37 -0.44 -0.94 -1.23 -0.82 -2.14 -2.73 -1.42 -0.93 1.28 1.49 0.7 1.1
-0.5 0.15 -1.53 -1.41 -0.64 -0.33 -0.54 0.04 -0.2 0.4 -1.07 -2.3 1.0 1.07 0.87 0.61

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.