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Heatmap: Cluster_187 (Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
0.81 -0.65 -2.09 -3.7 -1.6 -1.55 0.53 -0.54 -1.28 -1.43 0.05 -0.8 1.22 1.01 0.47 1.25
-1.21 -1.58 1.49 1.26 0.47 0.49 -0.17 0.95 -0.7 -0.59 -0.61 -0.97 -0.65 -1.17 -1.79 -0.74
0.26 -1.14 -0.14 0.37 0.05 0.71 0.56 0.31 -0.84 -0.91 0.34 -0.54 0.15 -0.15 -0.57 0.05
1.04 -0.98 -0.94 -0.27 -1.11 -0.39 -0.26 -0.41 -3.52 -3.31 -1.45 -1.75 1.43 1.11 0.42 1.15
-0.18 -0.68 -1.14 -0.99 -0.33 -0.29 0.74 0.19 0.8 1.19 0.75 0.31 -0.73 -0.98 -1.02 -0.8
-2.3 - -5.28 -5.17 -5.28 -2.52 -8.75 -0.05 -5.11 -6.05 - - 2.29 1.74 1.03 2.09
0.32 -1.87 0.55 0.77 0.56 0.7 -0.68 -0.79 -0.86 -1.21 -0.01 -0.22 0.23 -0.2 -0.07 0.23
-0.26 -0.84 -1.38 -1.59 -1.01 -0.45 -0.13 -0.65 -1.75 -3.6 -0.61 -0.68 1.76 1.2 0.61 1.15
0.78 -1.64 -0.48 -0.73 -0.66 0.15 0.01 -0.41 -1.23 -1.62 -0.61 -0.79 0.99 0.59 0.54 1.15
0.22 -0.61 -1.74 -2.55 -1.26 -0.98 -0.08 0.73 1.01 1.01 -0.82 -1.94 0.65 0.5 -0.31 0.62
-0.1 -1.28 0.05 -0.48 0.74 1.3 -0.04 -0.36 -4.72 -5.09 0.39 0.13 0.46 -0.05 0.09 0.2
-1.98 -0.8 -1.73 -1.66 -0.47 -1.2 0.07 -1.09 -2.4 -3.26 -1.59 -1.56 1.56 1.46 1.08 1.63
1.24 -0.3 -0.61 -0.83 0.26 -0.07 0.69 -0.91 -1.18 -0.76 0.44 -0.35 0.21 -0.11 -0.58 0.48
0.28 -2.92 -3.22 -3.07 -1.74 -1.72 -2.65 0.84 1.06 1.76 -1.77 -2.87 0.8 0.5 -0.07 0.9
-0.73 -1.23 0.98 1.18 0.6 1.08 -0.66 -0.71 -0.94 -0.5 0.76 0.36 -0.96 -1.5 -1.82 -1.0
-0.52 -2.95 -1.62 -2.02 -1.47 -0.89 -0.51 -0.39 -3.93 -6.19 -1.07 -1.48 2.2 1.22 0.08 1.74
0.41 -0.49 -0.61 -1.03 -0.87 -0.69 -0.24 -0.78 -1.34 -1.23 0.07 -0.16 1.22 0.74 0.14 1.23
-0.54 -0.06 -1.27 -1.67 -0.78 -0.59 -0.1 -0.23 -1.22 -0.98 0.1 -0.29 1.37 0.8 0.57 0.97
0.17 -2.86 -0.52 -1.06 0.05 -0.08 -0.27 1.13 -1.76 -1.68 -4.01 -3.55 1.24 1.14 0.07 1.14
-0.45 -0.81 0.4 0.47 0.46 -0.01 0.2 -0.27 0.57 0.35 -0.26 -0.81 0.16 -0.38 -0.55 -0.12
-0.09 -0.35 -0.89 -0.44 -0.56 -0.27 -0.03 -0.86 1.16 1.16 0.59 0.31 -0.26 -0.76 -1.16 -0.19
0.1 -0.89 -0.19 0.16 -0.59 -0.44 0.21 -0.26 0.46 0.69 0.8 -0.15 0.18 -0.4 -1.0 -0.02
-0.3 -2.97 -0.47 -0.5 -0.1 0.24 -0.48 -0.66 -4.41 -3.48 0.4 0.4 1.12 0.54 0.56 1.19
-0.67 -1.43 -0.55 -0.4 -0.5 -0.13 0.05 -0.36 0.44 0.82 0.93 0.44 0.26 -0.32 -0.72 0.17
0.81 -1.21 -0.34 0.15 0.06 -0.01 0.3 -0.14 -1.34 -2.28 0.94 0.82 0.21 -0.4 -0.47 -0.29
-0.73 -1.52 -1.55 -1.74 -1.28 -0.48 -0.01 -0.29 0.96 2.26 0.29 -0.72 -0.28 -0.67 -0.81 -0.21
0.47 -0.46 -0.7 -0.62 -0.16 0.16 0.34 -0.72 0.21 0.59 0.8 0.3 -0.12 -0.34 -0.84 -0.28
0.67 -2.85 -0.91 -1.46 0.31 -0.47 0.52 -0.38 -3.33 -3.67 -1.46 -2.38 1.65 0.99 0.27 1.1
1.14 -1.29 -1.56 -1.04 -1.89 -0.67 -1.21 2.3 0.07 1.64 -0.58 -0.6 -1.78 -2.45 -3.18 -2.24
0.28 -0.57 -1.18 -0.97 -2.01 -2.14 0.49 -0.21 0.56 0.49 0.66 -0.06 0.62 0.25 -0.08 0.4
0.04 0.01 -0.05 0.21 0.13 -0.18 0.64 -0.12 -0.19 0.09 1.06 0.28 -0.63 -0.9 -1.21 -0.9
-1.41 -6.83 1.19 1.11 0.69 -1.11 -0.08 -1.1 -3.94 -5.84 -1.87 -0.59 1.03 0.71 -0.19 1.08
-1.25 -2.55 0.24 0.65 0.19 0.19 0.21 -0.67 -1.86 -1.14 0.1 -0.41 0.99 0.3 -0.34 1.03
-3.47 1.69 -4.46 -5.61 -8.14 -7.3 -6.13 3.06 -2.74 -2.51 -7.6 -6.12 0.12 0.25 -1.47 0.37
-1.09 -0.2 -0.97 -0.61 -1.27 -1.39 -0.56 0.8 1.29 2.46 -0.39 -1.03 -1.52 -2.11 -2.85 -1.51
-3.68 - -4.11 -6.64 -4.51 -3.69 -3.18 1.55 - - -4.85 -6.1 2.22 1.91 -0.3 1.77
-0.54 -2.6 -2.11 -1.34 -1.39 -0.44 -0.15 0.1 0.4 0.86 0.83 -0.27 1.04 0.38 -0.61 0.74
-1.26 -0.92 -3.2 -1.75 -3.13 -1.23 1.0 1.57 1.18 1.06 0.25 -0.31 -0.2 -0.61 -1.51 -0.14
0.25 -1.01 0.21 0.57 0.31 0.39 -0.46 -0.74 -0.58 -0.16 0.16 -0.61 0.61 -0.06 -0.29 0.22
-0.84 -0.82 0.3 0.58 -0.19 0.03 -0.02 -0.85 0.97 0.96 1.05 0.52 -1.39 -1.7 -1.93 -1.55
-2.4 -3.03 1.41 1.25 1.72 1.1 -0.92 -1.53 -2.0 -2.66 0.69 0.43 -1.8 -2.6 -2.04 -1.82
-0.85 1.87 -10.29 - - - -5.92 2.73 0.37 0.5 - -9.74 -0.43 -0.81 -1.19 -0.53
-0.98 -2.48 -6.09 -5.11 -6.78 -5.95 -5.64 1.57 -0.09 -0.22 -7.37 -7.48 1.79 1.35 0.51 1.59
0.93 -0.16 0.37 -0.35 0.53 0.76 -0.4 -0.9 -3.72 -6.29 -1.26 -0.8 0.79 0.4 0.18 0.52
-2.52 -1.39 1.11 1.56 -0.05 0.99 -0.44 0.3 -0.28 -0.72 -0.11 -0.53 -0.33 -1.31 -1.07 -0.54
0.12 -0.9 -0.5 0.0 -0.43 0.05 -0.02 -0.48 0.15 0.34 0.41 0.06 0.47 0.01 -0.39 0.36
-0.8 -1.6 -9.16 -10.41 -9.61 -7.32 -7.95 1.51 -0.98 -1.68 - - 1.94 1.58 0.68 1.58
-1.97 - -1.12 -1.44 -1.72 -1.38 -0.91 0.71 -4.39 -3.52 -4.88 -3.99 1.93 1.83 0.26 1.7
-0.43 -0.94 0.28 0.51 0.12 0.14 0.12 -0.37 0.04 -0.02 0.72 0.34 0.18 -0.57 -1.26 -0.15
-0.14 -1.35 -1.05 -0.87 -0.76 -0.47 0.92 0.1 -0.19 -0.18 0.81 0.04 0.67 0.11 -0.45 0.54
0.09 -1.73 -0.65 -0.44 -0.16 -0.21 0.47 0.29 -0.3 0.06 0.39 -0.15 0.88 -0.05 -0.38 0.34
0.74 0.72 -1.14 -1.56 -0.72 0.15 -0.64 -1.76 -2.68 -1.68 0.06 -0.54 1.22 0.56 0.07 1.13
0.48 -0.54 -0.93 -1.33 -0.68 -0.23 0.13 -0.45 -0.03 0.05 0.42 0.07 0.73 0.14 -0.05 0.64
0.29 -0.92 -0.39 -0.11 -0.07 0.35 -0.02 -1.14 -1.75 -1.84 0.49 0.28 0.97 0.41 -0.12 0.57
0.18 -1.58 -0.39 -0.47 -0.22 0.2 1.18 0.18 -0.72 -0.48 0.72 0.34 0.07 -0.42 -1.12 0.18
-3.98 -8.67 -1.62 -2.56 -0.12 0.43 0.51 -0.63 -8.92 - 0.86 0.72 1.11 0.84 0.28 1.31
1.24 -0.18 -3.72 -3.82 -3.55 -4.1 -4.96 2.86 0.08 0.59 -4.24 -8.59 -0.36 -1.06 -1.17 -0.21
1.3 -1.47 -2.28 -1.51 -1.57 -0.36 0.03 0.49 -2.37 -1.46 1.76 2.07 -1.89 -2.09 -3.33 -1.58
-1.68 -2.21 -1.16 -2.66 -1.45 -1.29 -0.74 -0.24 - - -1.97 -2.1 1.96 1.63 1.17 1.54
0.11 -0.08 -2.27 -1.85 -1.67 -0.65 0.87 0.32 0.52 1.02 0.45 -0.12 0.2 -0.26 -1.06 0.33
-2.66 - -5.1 -4.91 -5.1 -2.95 -9.23 1.05 - - -7.9 - 2.49 1.92 0.17 1.59
-1.2 - -0.86 -2.4 -0.91 -0.57 -2.4 -0.78 - - -6.21 -2.79 1.9 1.82 1.04 1.75
-0.36 -1.07 -0.98 -1.11 -0.93 -0.18 0.7 0.15 -0.2 -0.49 0.4 -0.03 0.96 0.31 0.2 0.5
0.7 -2.04 -1.05 -1.57 -1.06 -0.98 0.11 -0.57 -1.61 -0.31 0.5 -0.95 1.18 0.82 0.32 1.16

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.