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Heatmap: Cluster_154 (Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
1.2 0.08 -2.15 -2.53 -1.39 -1.38 0.07 -0.03 0.07 0.07 -0.19 -0.32 0.78 0.07 -0.06 0.96
-0.51 -1.14 -1.2 -0.93 -1.16 -0.98 0.78 0.29 -0.06 -0.24 0.91 0.64 0.5 0.07 -0.03 0.39
0.84 0.02 -0.93 -0.74 -0.77 -0.82 0.9 0.05 0.55 0.29 0.35 0.18 -0.14 -0.68 -0.58 -0.46
-0.15 0.17 -0.68 -0.71 -0.29 -0.06 0.71 -0.06 0.52 0.33 0.77 0.66 -0.76 -0.88 -0.55 -0.79
0.42 0.22 -1.39 -1.23 -0.87 -0.81 0.38 0.62 0.6 0.38 0.47 0.43 -0.43 -0.31 -0.26 -0.3
-0.44 -0.0 -1.29 -0.73 -1.17 -1.23 1.05 0.24 0.38 -0.03 0.64 0.95 -0.22 -0.45 -0.38 0.01
0.63 -1.23 0.8 0.65 0.21 0.07 0.15 -0.48 -1.5 -1.04 0.46 -0.21 0.08 -0.52 -0.29 0.05
1.39 0.5 -1.33 -1.05 -0.84 -0.96 -0.77 -1.24 -0.2 -0.47 0.23 -0.13 0.59 0.22 0.29 0.52
0.78 -0.07 -1.06 -0.74 -0.67 -0.82 0.4 -0.24 0.51 0.49 0.49 -0.02 0.48 -0.5 -1.25 0.2
-0.21 -0.64 -1.36 -0.91 -0.9 -0.25 0.44 -0.02 0.9 0.93 1.0 0.61 -0.34 -0.86 -1.38 -0.25
-0.04 0.26 -2.07 -1.37 0.08 -0.49 0.51 -0.23 -0.43 -0.65 -0.52 -2.05 1.36 -0.39 -0.29 1.43
1.01 -0.96 0.97 1.32 0.2 0.37 0.15 -1.02 -2.08 -2.13 0.71 0.38 -1.19 -1.64 -1.47 -1.15
0.64 0.12 -1.0 -1.2 -0.55 -0.49 0.26 0.04 0.16 0.04 0.13 0.12 0.34 -0.1 0.11 0.25
0.35 -0.82 -2.99 -2.79 -2.37 -1.85 0.14 0.42 1.41 1.64 -0.2 -0.63 0.13 -0.28 -0.38 -0.0
0.32 0.25 0.82 0.99 1.27 0.58 -0.65 -1.5 -1.09 -0.65 0.17 0.08 -1.06 -1.64 -1.32 -1.26
-0.21 -0.11 -0.85 -0.77 -0.29 -1.16 0.66 0.57 0.68 0.63 0.15 0.29 -0.14 -0.91 -0.53 0.16
-0.64 -1.96 -0.5 -0.7 -1.07 -0.57 0.75 1.09 -2.99 -3.84 -2.56 -4.91 1.42 0.9 0.46 1.32
0.37 0.3 -0.4 0.12 -0.06 0.3 0.06 -0.07 0.55 0.17 -0.02 0.13 -0.25 -0.74 -1.66 0.03
0.37 -1.39 -0.88 -0.91 -0.19 0.01 0.37 -0.22 -0.75 -0.39 0.28 -0.88 1.04 0.44 0.29 0.56
-0.0 -0.57 0.18 0.56 0.01 -0.33 0.64 0.03 0.75 0.91 0.26 -0.14 -0.83 -1.56 -1.76 -1.09
0.71 0.34 0.2 0.64 0.2 -0.37 0.41 -0.37 -0.13 -0.39 0.64 0.54 -1.04 -1.54 -1.18 -1.28
0.62 0.63 -1.82 -1.26 -0.88 -0.7 0.72 0.43 0.93 -0.03 -0.09 -0.58 0.11 -0.45 -0.54 0.1
0.26 -1.27 0.14 0.56 0.4 -0.18 0.19 -0.33 -0.5 -0.6 0.6 0.17 -0.07 -0.4 -0.47 0.3
-0.2 -1.1 -1.58 -1.68 -0.88 -1.41 -0.14 0.59 1.65 1.3 -0.01 -0.29 0.09 -0.42 -1.05 -0.02
0.67 -0.58 -0.91 -0.88 -0.43 0.21 0.28 -0.21 0.12 -0.25 0.37 -0.36 0.42 -0.21 0.32 0.31
2.28 -1.79 -1.37 -1.95 -1.15 -2.29 -1.59 -0.89 -3.04 -1.49 -2.46 -5.37 1.38 0.5 0.43 1.39
1.04 0.16 -2.66 -2.52 -0.52 -2.06 -2.53 -1.51 0.52 0.94 1.17 0.02 0.58 -0.1 -0.67 0.43
-0.1 -0.11 -1.94 -1.51 -1.3 -0.95 1.22 0.52 0.48 -0.05 0.74 -0.16 0.34 -0.58 -0.85 0.51
0.66 -0.83 -0.48 -0.5 -0.15 -0.29 0.41 0.04 -0.06 -0.23 0.5 0.35 0.2 -0.29 -0.21 0.03
0.42 0.79 -0.72 -0.26 -0.23 0.1 0.65 0.02 0.01 -0.21 0.67 0.44 -0.53 -1.13 -1.84 -0.45
1.6 -2.27 -0.67 -1.77 -0.77 -1.85 -2.9 -2.89 -7.69 -4.63 -1.45 -2.24 1.37 0.9 1.31 1.66
0.19 -0.01 -1.3 -0.88 -1.14 -0.87 0.22 0.32 1.02 0.99 0.47 0.0 -0.17 -0.41 -0.6 -0.31
0.95 -0.77 -0.57 -1.15 -0.22 0.29 0.56 -0.01 -0.96 -1.79 -0.16 -0.5 0.61 0.25 0.44 0.41
0.93 -1.0 -0.75 -1.65 -0.38 -0.24 -0.74 -0.54 -1.94 -2.83 -1.26 -1.25 1.23 0.63 0.9 1.48
-1.02 -0.8 -2.02 -1.69 -0.81 -0.27 1.26 0.17 1.25 0.54 1.13 -0.56 -0.23 -1.83 -1.52 0.34
-0.28 -1.41 -3.24 -3.01 -2.18 -1.92 -0.93 0.79 2.04 2.13 -0.39 -1.67 -0.59 -1.11 -1.17 -0.58
-0.49 -1.18 -2.03 -2.17 -1.47 -1.24 -0.38 0.61 1.29 1.7 -0.37 -1.03 0.12 -0.18 -0.16 0.57
2.55 -0.07 -1.05 -1.01 -0.75 0.15 -0.22 -1.17 -0.66 -0.65 -0.5 -1.59 -0.44 -0.7 -0.52 -0.21
0.75 -0.67 -1.9 -2.58 -1.55 -1.34 -0.54 1.59 -0.56 0.28 -1.24 -0.97 0.71 0.58 0.51 0.53
0.64 -1.05 -0.54 -1.05 0.01 0.18 -0.15 -0.58 -1.22 -0.73 -0.02 -0.38 0.93 0.14 0.49 0.91
0.38 0.37 -0.27 0.37 0.16 0.04 0.26 0.2 -0.09 -0.42 0.15 0.57 -0.5 -1.01 -0.64 -0.58
0.78 0.1 -1.04 -1.09 -0.96 -0.41 -0.77 -1.32 -1.02 -0.89 -1.26 -1.36 1.25 0.51 0.92 1.3
1.51 -2.67 -0.35 -1.95 -2.3 -1.14 -0.03 0.2 -5.04 - -3.94 -3.46 1.48 0.57 1.09 1.36
0.51 -0.19 -0.82 -0.75 -0.33 -0.38 -0.2 -0.2 0.09 -0.04 -0.48 -0.66 0.64 -0.31 0.66 0.93
0.15 -0.31 0.01 0.58 -0.19 -0.07 0.44 0.01 -0.27 -0.29 0.08 0.1 0.05 -0.56 -0.2 0.06
-0.01 0.87 -2.1 -2.21 -1.91 -1.75 -1.95 1.42 0.99 1.1 0.52 0.22 -0.38 -0.63 -1.24 -0.62
-0.11 -0.94 -1.4 -2.03 -1.27 -1.11 0.17 -0.23 -1.43 -0.78 0.73 0.25 1.26 0.76 0.37 0.91
-0.46 -0.72 -1.34 -1.19 0.17 0.48 0.72 0.02 0.12 0.05 0.43 0.15 0.33 -0.14 -0.51 0.27
0.45 -1.3 -1.49 -1.62 -1.08 -0.22 0.11 0.36 0.48 1.18 -0.03 -0.84 0.38 -0.04 0.18 0.32
1.98 0.68 -1.35 -1.52 -0.7 -0.98 0.3 -0.96 -0.23 0.09 0.34 0.26 -0.55 -1.08 -1.24 -0.19
-0.12 -0.67 -2.62 -2.85 -2.51 -1.78 0.81 -0.0 0.94 0.75 1.01 0.53 0.19 -0.24 -0.42 0.17
-0.08 -1.42 -1.56 -2.11 -1.13 -0.58 -0.61 0.72 1.04 0.94 -0.08 -0.8 0.45 0.02 0.67 0.29
-0.51 -0.62 -0.59 -0.34 -0.61 -0.74 0.74 1.22 0.62 0.54 0.07 0.07 -0.35 -0.52 -0.64 -0.47
1.02 0.43 -1.33 -1.5 -0.87 -0.89 0.13 0.92 -1.01 -0.19 -2.2 -2.03 0.72 0.37 0.38 0.77
-0.01 0.26 -3.93 -3.18 -2.2 -2.0 0.38 0.35 1.45 1.76 0.24 -0.71 -0.17 -0.77 -1.89 -0.13
-0.63 -0.55 -1.21 -0.69 -0.76 -0.38 1.14 -0.05 1.66 0.71 1.01 -0.74 -0.86 -2.7 -3.27 -0.19
-0.37 -0.92 -3.76 -3.72 -2.85 -1.88 -0.97 1.37 1.78 2.02 -1.38 -1.97 -0.06 -0.99 -1.45 0.11
1.25 0.63 -0.61 -0.82 0.01 0.03 0.13 -0.58 -0.36 -0.59 -0.16 0.07 -0.01 -0.4 0.06 -0.18
-1.23 -2.16 0.39 0.79 0.91 -0.09 0.81 -0.1 0.06 0.32 0.71 0.29 -1.13 -1.73 -1.78 -0.73
0.35 -0.04 -0.31 -0.75 -0.16 0.16 0.57 -0.52 0.46 0.21 0.97 1.0 -1.43 -1.52 -0.86 -1.33
-0.72 -2.54 -1.03 -1.04 0.05 0.49 0.57 0.72 -0.14 0.77 -0.46 -0.45 0.47 -0.17 -0.06 0.45

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.