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Heatmap: Cluster_60 (Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
-0.29 3.83 -2.8 -2.78 -5.0 -2.57 -5.79 -2.33 - - - - - -2.72 - -3.34
- - - - - - - - - - - - - - - -
- 4.0 - - - - - - - - - - - - - -
- - -2.5 - 2.03 0.21 3.4 -4.45 - - - - - - - -
- - 1.8 1.16 2.91 0.18 0.66 -9.73 - - - -3.91 - - - -
- - - - - - - - - - - - - - - -
2.85 - 1.19 -0.48 0.32 1.48 - - -0.23 - -0.14 - - - - -
-0.47 - 1.74 1.54 0.97 2.09 - - - - 1.04 -0.39 - - - -
- - - - - - - - - - - - - - - -
- - 0.93 - - 0.49 - - - -0.42 3.07 1.83 - - - -
- - - - - - - 4.0 - - - - - - - -
- - - - - - - - - - - - - - - -
- - - - - - - - - - - - - - - -
- - -1.38 - 3.41 -0.42 - - - - 1.87 -0.82 - - - -
- - 3.12 - 0.39 1.32 0.58 - - - 1.03 - - - - -
- -3.06 2.48 0.54 1.29 2.54 -1.79 -6.31 - - - -2.88 - - - -2.6
-1.3 - - - - -3.21 - -1.14 2.1 1.91 1.42 1.8 - - -0.28 -
4.0 - - - - - - - - - - - - - - -
- - - 0.76 - 0.39 - 0.89 1.03 - - - - - - 3.19
- - - - - - - - - - - - - - - -
- - - - - - - - - - - - - - - -
- - 3.35 - 2.46 - - -1.94 - - - - - - - -
- - - - - - - - - - - - - - - -
- - - - - - - - - - - - - - - -
- - 2.66 3.22 - - - -1.58 - - - - - - - -
3.18 - - - 1.74 - - 1.83 - - - - - - - -
- -1.15 -1.43 - - - - - - - 1.86 3.17 - - - 1.34
-3.27 3.5 0.59 0.33 0.09 -1.96 -1.09 -8.28 - - - - - - - -
4.0 - - - - - - - - - - - - - - -
-10.4 - 1.47 0.56 0.44 1.04 1.18 -1.69 -5.65 -6.18 1.5 1.53 - - - -
- - - - - - - - - - 4.0 - - - - -
-1.77 3.96 -3.47 - - - - -4.15 - - - - - - - -
- - 0.96 1.91 2.4 1.06 0.52 -2.4 - -0.1 -2.07 -2.76 - - - -
- - 0.61 - 2.09 2.29 2.41 - - - - - - - - -
- - - - - - - 2.74 - - - - - 3.22 - -
-2.33 - 1.89 2.72 -1.31 2.0 - - - - - 0.16 - - - -
- - - - - - - - - - - - - - - -
- 3.61 -0.47 -2.13 -0.75 -2.5 - -1.43 -0.3 -0.24 - - - - - -
- - - - - - - - - - - - - - - -
- - - - - - 4.0 - - - - - - - - -
- - - - - - - - - - - - - - - -
- - 0.97 1.31 - - 0.3 2.1 1.57 1.63 - - - - - -
- 4.0 - - - - - - - - - - - - - -
- - - - - - - - - - - - - - - -
- - - - 2.86 3.13 - - - - - - - - - -
- - - - 1.41 2.85 2.62 - - - - - - - - -
- - - - - - - - - - - - - - - -
- - - - - - - 4.0 - - - - - - - -
- - - - - - - - - - - - - - - -
- 4.0 - - - - - - - - - - - - - -
1.01 -5.91 1.27 1.08 2.6 1.04 0.29 -7.87 - - -4.83 -3.61 - - - -
-1.44 1.05 - - 2.62 2.89 - - - - - - - - - -
- - -2.71 -0.38 3.24 2.26 -0.21 - - - - - - - - -
-4.73 0.34 -5.29 -3.83 -3.61 -0.99 -6.42 2.35 2.11 2.13 -2.41 -5.6 - - - -
-0.25 -0.74 0.54 1.13 1.93 2.09 1.01 -1.44 - - -1.12 - - - - -
-8.87 -3.54 -1.04 -0.18 0.01 0.62 -0.68 -2.38 -2.1 -0.91 2.33 2.43 - - - -
- - - - - - - - - - - - - - - -
- - 2.98 - - 3.02 - - - - - - - - - -
2.86 - - - - - 3.13 - - - - - - - - -
3.99 - - -3.41 - -5.36 - - - - - - - - - -
-3.63 -4.97 2.67 2.48 0.76 -0.02 -3.28 -3.07 - -3.2 -0.75 -1.52 - - - -
- - - 4.0 - - - - - - - - - - - -
- - - -0.3 0.85 - - - 2.5 1.17 2.16 -0.0 - - - -
- - - - - - - - - - - - - - - -
-0.76 -2.09 1.25 -0.23 - -0.6 1.77 -0.04 -0.99 - 2.56 -1.0 - - - -
- - - 2.11 - 1.74 0.52 - 2.35 0.83 - - - - - -
4.0 - - - - - - - - - - - - - - -
-5.15 -6.92 -2.46 -2.02 -1.15 3.49 - -4.09 1.82 -3.61 -4.57 -3.1 - - - -
- - - - - - - - - - - - - - - -
- - - - - - - - - - - - - - - -
- - 1.86 1.71 -0.08 0.89 2.32 -2.19 - - -0.27 -1.96 - - - -
- - -0.75 -0.57 -2.72 -1.21 -3.64 -2.42 1.61 2.06 2.24 0.96 - - - -
- - - - - - - - - - - - - - - -
-2.35 - 0.94 1.17 2.66 1.64 0.86 -7.89 - -6.21 -1.93 -3.47 - - - -
- - - - - - - - - - 2.08 3.56 - - - -
- - - - - - - - - - - - - 4.0 - -
-2.81 -4.9 -0.37 0.06 -0.57 -0.06 1.0 3.3 -2.69 -3.63 -3.6 -2.12 - - - -
- - - - - - - - - - - - - - - -
- - - - - - - - - - - - - - - -
-3.89 0.42 -5.7 -4.37 -4.56 -4.73 -1.72 3.22 1.57 -0.43 -0.45 -2.14 - -2.83 - -
- - 0.86 1.2 3.5 -0.75 - - - - - - - - - -
-1.09 3.84 - - -2.64 -2.52 - - -3.48 - -3.39 - - -2.26 -1.19 -
- - - - - - - - - - - - - - - -
- - - - - - - - - - - - - - - -
- - - - - - - 2.3 - - - - - 3.47 - -
- - - - - - - 0.86 - - - - - 3.83 - -
- -10.01 - - - - -7.41 1.6 3.21 1.9 - - - - - -
- - 2.61 2.26 1.9 0.44 -5.08 -9.34 - - -8.3 -8.41 - - - -
-4.15 - 0.83 0.25 1.77 1.53 2.48 -3.04 - - -1.56 -0.66 - - - -
4.0 - - - - - - - - - - - - - - -
- - -0.25 1.59 2.94 -0.3 -1.88 -0.45 -2.39 -1.7 -0.17 0.36 - - - -
- - - - - - - - - - - - - - - -
- - 2.28 2.32 -1.06 2.5 -8.54 -7.96 - - - - - - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.