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Heatmap: Cluster_106 (Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019))

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View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
0.05 -0.67 1.5 1.38 1.38 1.52 -5.0 -5.99 -3.45 -0.5 0.12 0.52 - - -4.03 -
-4.75 -4.34 1.27 1.72 1.58 2.1 -2.61 -4.24 -1.42 -1.31 0.05 -0.57 -5.13 -5.71 -2.44 -8.06
-4.5 -0.41 0.93 1.35 1.69 1.49 -2.51 -3.0 -0.79 0.39 0.32 0.11 -7.2 -4.83 -2.9 -6.32
- -2.06 0.57 -0.09 - 0.87 0.48 - - - 1.26 1.16 - - 2.45 -
-0.08 - - - - - 1.13 - - - - - - - 3.69 -
- -5.87 -3.42 -3.57 -2.41 -2.17 -0.38 1.09 -4.05 -3.99 1.4 1.77 -2.74 0.97 2.08 -
- - - - 2.46 0.36 - - - - - - - - 3.2 -
- - - - 0.14 - - - - - - - - - 3.9 -
- - 1.73 - -0.16 - 0.05 -1.96 - 0.4 - - 1.63 - 2.6 -
- - - - - - - - - - - - - - 4.0 -
- - 2.68 1.77 1.66 0.44 -3.71 -6.97 - - -1.66 0.29 - -7.65 -5.58 -
- - 1.41 2.29 2.94 -1.55 -1.58 - - - -7.33 -5.11 - -6.18 -4.1 -
- - -2.67 -1.69 0.33 -0.99 0.99 -6.54 2.87 1.93 -4.23 -3.6 - -5.66 -1.01 -
- - - - - - - - - - - - - - 4.0 -
-2.34 -4.93 2.19 2.41 1.77 0.84 -3.43 -3.39 -2.68 -4.59 -3.08 -3.0 -6.12 -7.02 -4.95 -8.05
- 0.08 - - 0.16 0.99 - -1.04 - - - - - - 3.5 -
1.12 - - - - - - - - - - - - - 3.79 -
- - - - - - - - - - - - - - 4.0 -
1.55 -1.2 0.33 - - - - -3.32 -0.1 - - - 1.25 0.15 2.22 1.12
- - -1.66 1.48 0.26 2.57 1.03 -7.12 - - 1.15 -1.1 - - 0.0 -
3.99 -3.74 - - -7.06 - - -9.84 - - - - - - -4.3 -
- - 1.54 2.99 0.4 -0.08 - - - - -1.37 -0.47 - - 0.84 -
- - 1.41 2.98 2.2 -1.32 -3.19 - - - -5.01 -2.79 - -4.87 -2.8 -
1.0 0.32 1.17 1.7 0.9 1.27 -1.25 -0.92 -1.55 -3.05 -0.84 -0.93 -5.4 -2.87 -1.76 -5.1
- - - 1.17 - - - - - - - - - - 3.78 -
- - - - - - - -0.15 - - - - - - 3.92 -
-3.37 -1.57 1.22 1.12 0.91 -4.71 -2.12 -3.05 -2.1 -2.78 - -5.43 -1.64 -0.36 2.75 -0.83
-2.1 3.38 - - - - - 1.77 -1.24 - - - - - 0.05 -1.05
-2.0 0.13 -0.92 0.04 -0.7 0.44 -0.59 -1.6 -0.1 1.87 -0.25 -0.41 -0.49 -0.12 0.23 0.17
- - 1.14 1.69 2.19 0.27 -5.94 - - - 0.34 1.37 -2.94 -3.23 -0.51 -
1.64 -3.05 0.63 0.69 0.76 0.32 0.46 0.68 -3.76 -1.81 -3.08 -1.38 -2.09 -1.42 0.65 -0.63
- - -0.96 -0.18 1.19 1.03 -0.72 -2.47 - 1.01 0.25 1.51 0.21 - 1.19 -
-7.53 4.0 - - - - - - - - - - - - -6.76 -
- - - - - - - - - - - - - - 4.0 -
- - - - - - - - - - - - - - 4.0 -
-7.06 -4.97 1.93 1.63 0.98 1.06 0.27 -2.43 0.11 0.23 -0.54 -0.59 - - -6.83 -
2.49 1.58 -0.71 -0.94 -0.36 -0.27 -0.2 -0.41 -1.52 -1.5 -1.02 -0.49 -2.0 -2.85 -0.7 -3.02
-7.0 4.0 - -11.66 - - - - - - - - - -11.79 -10.72 -
0.59 -1.37 -0.98 -0.71 -1.61 -0.91 -0.83 -1.38 -1.57 -0.42 1.16 -0.76 1.02 0.17 0.93 1.15
- -5.19 -2.65 -2.44 0.71 0.7 3.16 -1.07 -2.49 -3.28 0.68 -0.76 - - -1.34 -3.44
- - - - - - -8.05 1.54 -0.42 3.62 - - - - -4.49 -
- 3.46 - - - - - - - - - - - - 2.31 -
-0.33 0.16 0.98 0.34 -0.57 -0.9 -2.17 -4.21 -2.85 -2.8 -0.16 -1.27 -0.59 0.9 2.39 -
- - - - - - - - - - - - - - 4.0 -
-0.85 0.41 - 0.26 -2.26 -2.43 - -3.46 1.63 -1.77 - -1.84 -0.48 -1.57 2.82 -0.6
- - - - - - - - - - - - - - 4.0 -
0.65 3.37 - - -1.91 - 0.6 -0.99 - - - - - - 0.84 -
1.59 -1.21 -0.64 -0.09 -0.59 0.37 -2.57 -2.35 -0.75 -0.4 -1.76 -1.9 0.35 0.44 1.53 0.28
1.75 2.61 - -4.11 - -2.89 - -3.86 1.84 0.92 -2.16 -1.85 - - -1.6 -
3.23 -5.52 1.11 1.4 -4.82 0.14 -1.82 -4.15 - -4.32 - -4.39 - - -2.07 -
-9.55 -8.47 0.16 0.71 2.79 0.64 -0.35 1.19 -0.14 -1.46 -3.61 -1.72 -10.02 -7.66 -4.29 -
- 2.01 -0.23 -0.48 -0.09 - - -1.87 - - - -0.26 - 1.01 2.67 -
-6.41 -9.75 1.51 2.04 2.03 1.25 -0.0 -2.76 -3.04 -3.47 -1.15 -0.66 -7.28 -7.38 -2.99 -
- - -2.48 - - - - 0.26 1.4 2.6 -1.82 - - -1.66 2.41 -
- -8.29 2.37 1.67 1.21 0.39 -0.54 -0.09 -9.59 -6.03 0.36 0.12 - - -8.86 -
- - - - - - - - - - - - - - 4.0 -
- - - - - - - - - - - - - - 4.0 -
- - 0.27 0.88 1.54 -0.25 2.26 -6.2 - - 1.3 0.35 - - -0.65 -
3.91 -1.24 - - - -8.46 -9.09 - -7.86 - - -7.87 - -3.35 -1.44 -5.63
- -1.52 - - - - - - - - - - - - 3.97 -
- - - - - - - - - - - - - - 4.0 -
- - - - - - - - - - - - - - 4.0 -
-3.29 -5.46 0.81 1.37 1.51 1.6 -0.59 -1.81 -4.06 -5.35 -1.59 -1.56 -0.96 -0.2 1.06 -1.12
3.24 -8.37 -4.53 -5.64 -6.33 -5.49 -7.45 - -8.2 - -8.1 - -0.48 -0.36 2.24 -2.04
- - - - - - - - - - - - - - 4.0 -
-1.5 -4.95 0.54 0.85 1.5 0.82 -2.27 -3.48 -0.84 0.58 -2.16 -1.85 -1.18 -0.35 1.48 -0.16
-4.04 -4.95 1.09 0.96 -1.5 0.02 -1.64 1.52 1.14 1.88 -3.02 0.08 - - -2.13 -
-7.65 - - - - - - -3.84 - - - - 1.44 2.3 2.98 -1.33
-1.33 2.8 - - -1.31 - - - - - - - - - 3.04 -
3.62 -1.9 - -6.81 - - -9.4 -1.48 -6.16 -6.51 -7.06 - -0.96 -0.93 0.7 -1.27
-3.07 2.92 - -5.4 - - -4.42 -2.09 1.6 2.27 - - - - -2.87 -
-1.16 -1.83 -0.21 0.65 0.4 0.85 0.62 -2.89 -0.06 0.74 1.57 0.63 -2.53 -2.39 -1.59 -2.38
0.36 -0.72 -0.18 0.05 1.27 0.43 0.24 -0.69 -0.42 -0.59 0.79 0.7 -1.32 -1.74 -0.68 -0.86
-4.43 - -3.06 -5.9 2.55 0.32 -6.9 -1.02 -5.66 -4.6 1.99 1.99 - - -2.34 -
- -4.48 -1.13 -3.37 2.37 -0.14 1.03 -2.04 0.82 0.55 - -2.1 - -1.92 1.74 -
-5.88 - 2.95 -0.11 -1.49 -1.66 - -3.63 -0.93 2.54 - -4.52 - - -2.19 -
- - - -0.59 - - - - - - - - - - 3.94 -
3.2 - -0.88 -0.49 0.01 1.32 -0.25 -0.5 - - -3.32 -3.01 - - -1.69 -
-6.49 -2.24 0.8 0.53 0.66 0.12 -2.05 -1.17 -1.97 - -0.46 -2.82 0.02 0.11 2.27 0.26
-0.18 -3.67 -1.6 -0.84 0.35 -0.72 -3.43 -0.44 - -4.24 - -1.38 0.5 0.8 2.58 0.89
-8.45 -5.4 -4.32 -2.78 -4.05 -2.81 -2.76 2.3 2.73 1.87 -4.38 -4.26 - -6.82 -3.17 -
- 2.92 - - - - - - - - - - - - 3.07 -
- - 2.18 - - - - -2.05 - - - - - - 3.49 -
-6.4 -1.36 -0.19 0.72 3.06 1.98 -5.54 -4.72 -4.81 -6.56 -4.94 -3.54 -4.69 -4.2 -1.22 -5.4
- - 1.91 - 1.62 - 0.56 -3.75 - - - -0.53 - - 2.79 -
-3.06 -5.07 -3.98 -3.95 -6.47 -6.64 -7.28 -4.17 1.65 0.17 -3.95 -6.05 0.73 0.89 2.3 1.52
2.5 -1.38 -6.07 - - - - - - - - - -0.35 1.14 2.65 -0.58
-6.29 - -4.88 -4.13 -3.34 -3.69 -7.14 -7.13 1.95 3.24 0.32 -0.01 - - -2.58 -
- - 0.93 - - - - - - - - - - - 3.82 -
-0.35 3.01 -3.02 -2.44 -1.95 -2.43 -0.24 1.8 -1.04 -1.32 -1.41 -0.38 - - -4.81 -
1.42 -5.06 2.45 0.88 0.11 -2.08 - -6.61 - -4.51 1.76 -0.14 - -3.81 -1.9 -
- - - - - - - - - - - - - - 4.0 -
-0.95 -2.68 -2.28 -1.71 -3.29 -3.97 -3.71 -2.73 -0.71 -0.07 0.7 -1.33 0.82 1.07 2.47 0.51
-7.61 - 1.05 1.07 2.98 1.49 -4.95 -7.03 -2.5 -3.06 -1.25 -1.43 - - -5.53 -
2.45 -2.92 -5.54 -5.21 -6.41 -4.99 -3.51 -7.61 -3.16 -2.45 -1.78 -3.98 0.93 1.03 2.35 -0.94
-2.54 -1.64 -3.87 -3.89 -3.64 -2.19 -3.06 -1.25 -0.54 -1.46 -1.11 -4.12 1.49 1.35 2.33 1.37
-4.32 -3.18 0.36 -0.09 1.93 2.56 -2.7 -4.05 -4.2 -3.72 0.44 0.32 - -1.53 -0.65 -
3.88 -6.04 -6.5 - -3.79 -5.54 - -8.15 -5.93 - - - - -3.69 0.05 -
-4.03 - 2.02 1.91 1.5 2.13 -3.25 -7.73 - -7.44 -2.08 -1.32 - - -2.6 -
- -1.1 - - - - - -1.62 - - - - - - 3.93 -
- 0.63 - - - - - - - - 0.56 - - - 3.7 -
- - - - -6.62 - - -5.23 1.7 3.63 -2.51 -3.88 - - -3.86 -
- - 0.04 0.87 - - 3.55 -2.38 - - -1.57 -2.68 - - -0.4 -
- -0.64 - 1.54 0.02 - 0.22 - - - - - - - 3.36 -
- 2.52 - - - - - - - - - - - - 3.36 -
3.45 1.28 - 0.19 - -0.85 - -3.01 - - - - - - -0.27 -
- - - -3.39 - - - -2.21 3.13 2.71 -2.64 -4.74 - - -2.42 -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.