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Heatmap: Cluster_182 (Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019))

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View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
- 3.68 -2.4 -5.77 -1.38 -3.55 -6.77 -0.53 - - -0.48 0.13 - - - -
- - 2.36 3.09 1.23 - - - - - - - - - - -
2.79 2.48 - - - - - - - - - - - - 1.82 -
- - 2.98 2.34 0.11 -1.11 -3.21 -3.03 -1.63 -1.89 -0.68 -3.96 - - - -
0.39 -1.25 -0.68 0.06 -0.7 -1.16 -0.31 -1.04 -0.46 -0.46 0.66 0.22 0.93 0.01 0.84 0.43
-6.1 -7.17 1.33 1.6 2.9 1.37 -2.99 -4.28 -6.5 -8.02 -3.6 -3.21 - - - -
- - -0.46 -0.08 3.66 0.55 -4.0 -6.03 -4.13 -5.2 -4.45 -5.03 - - - -
-3.58 - -0.4 1.65 2.42 1.34 -0.51 -5.48 - - - - - -0.43 0.75 -0.04
-2.06 3.57 -1.55 -0.63 -3.43 -2.58 - 0.6 - - - - - -1.15 -0.67 -
4.0 - - - - - - - - - - - - - - -
-6.8 4.0 - - - - - - - - - - - -5.13 - -
-6.35 - 1.51 1.33 2.71 1.27 -2.72 -3.0 -2.16 -1.47 -1.0 -1.82 - - - -
- 2.54 0.0 -2.09 - - - - - - -1.76 - - -1.58 3.06 -
4.0 - - - - - - - - - - - - - - -
- - 2.38 1.81 1.21 2.28 - - - - -3.07 - - - - -
- - 0.77 -0.39 -0.44 1.17 1.09 -5.09 -1.16 -1.83 1.7 1.64 -2.11 -3.22 -0.08 -
-1.91 - 1.2 - 0.6 - 3.25 -2.19 -0.55 - - -0.56 - -0.3 - -
- 4.0 - - - - - - - - - - - - - -
- - - - - - - - - - - - - 1.62 3.69 -
- 3.88 - - - - - - - - - - - - 0.37 -
- - - - - 1.18 - 1.35 - 2.86 0.9 - - 1.03 - -
- - - - - - - - - - - - - - - -
4.0 - - - - - - - - - - - - - - -
-3.17 - 2.67 2.05 1.34 0.76 -3.04 -4.03 - - -1.71 - - - - -0.58
- -0.75 -7.17 -5.84 -5.46 -5.63 - -3.11 2.81 3.04 -6.52 - - - - -
- - 0.4 1.52 2.34 -1.02 2.37 -2.64 -5.55 -4.76 -1.07 -1.37 - -6.91 - -
- - - - - -1.31 - - - - 3.33 2.09 - -2.03 0.04 -
-2.05 - 1.34 1.41 0.69 0.04 - - - - -1.58 - - - 2.23 1.54
0.01 - 0.58 1.92 -0.87 2.72 - - - - - - - -0.19 - 0.79
- - 2.81 2.48 -0.09 0.84 -1.57 - - - -2.53 - - -2.4 - -
-3.83 - 1.63 0.77 2.13 2.42 -0.07 -6.52 - - -4.2 -1.9 - - -3.79 -5.89
-5.74 - -2.4 -3.65 2.49 2.65 0.96 -2.3 -4.42 -2.36 -1.52 -0.62 - -4.16 -2.09 -3.19
-7.55 -3.08 2.44 2.4 1.13 0.74 -1.67 -3.58 -4.84 -3.95 -1.42 -1.32 - -5.96 -4.63 -6.31
-6.55 -4.43 2.8 2.39 0.87 0.12 -5.69 -2.85 -1.73 -2.9 -3.68 -2.78 - - - -
- -0.66 1.74 0.85 3.23 - - - - - - - - -0.25 - -
1.0 3.5 -3.67 -5.34 -0.22 -0.49 -5.34 - - - -0.6 -1.78 - - - -
2.6 0.14 -2.8 -0.14 1.44 0.03 0.88 0.77 -2.82 -4.42 -2.96 -2.62 - - -5.19 -
-5.94 -2.44 1.41 0.77 1.29 1.09 0.03 2.35 - -5.55 -1.6 -1.29 - - - -
- - 0.32 1.58 1.39 0.65 2.81 -3.72 -6.08 - -2.99 -1.64 - - - -
- -4.36 -1.7 -0.43 3.62 0.58 -0.22 -5.47 - - -2.41 -3.84 - - - -
-2.41 -1.85 1.29 1.54 2.47 1.75 0.02 -6.03 - - -3.99 -3.21 -8.01 -9.11 -3.87 -
- - - - - - - - - - - - - - 4.0 -
4.0 - - - - - - - - - - - - - - -
- -13.49 2.71 2.54 0.43 1.16 -5.75 -14.31 - - -5.27 -5.1 - - - -
- 4.0 - - - - - - - - - - - - - -
2.44 - - - 3.4 - - - - - - - - - - -
- - - - - - - - - - - - - - - -
- - - - - 2.34 - - - - 3.06 1.37 - - - -
1.86 - 0.26 0.78 - -1.58 - -2.19 -1.98 1.41 1.57 1.59 - - - -
-3.51 -0.51 -2.71 0.14 -0.88 2.68 -1.14 0.54 1.72 -3.08 -3.05 -2.15 - -2.31 0.17 -
- - - - - - - - - - - - - - - -
- - - - - - - 0.86 - - - - - - 3.83 -
0.37 3.85 - - - - -3.41 - - - - -2.18 - - - -
- - 0.39 1.0 1.32 1.65 2.59 -4.27 - - -2.17 -0.4 - - - -
-4.08 3.94 -4.24 - - - - -0.86 - - - - - - - -
- - 0.5 2.95 0.63 2.2 - - -0.51 - - - - - - -
- - - - - - - - - - - - - - 4.0 -
-8.11 -3.29 -0.05 0.2 1.47 0.71 1.42 -1.22 -2.98 -3.12 1.85 1.25 -6.4 -7.49 -5.42 -
-5.6 -2.86 0.88 1.16 0.9 2.05 2.37 -4.25 -4.22 -4.9 -2.86 -2.03 -4.2 - - -5.33
- - - - - - - - - - - - - - - -
-13.34 - 2.75 2.46 1.2 0.26 -4.2 -8.9 - - -3.23 -3.27 - - - -
- 0.74 - - - - 2.18 -0.38 - - - - 3.18 - - -
- 3.6 -1.06 -1.13 -2.94 -1.08 -2.15 -1.84 -2.45 -1.39 - - - -1.25 -0.18 -
- 2.49 - - - -0.77 - - -0.15 - - - - - 3.15 -
- 3.59 - - - -3.0 -1.62 -2.43 -2.4 - - - - -2.13 1.52 -
- - - - -0.36 -0.95 - - - - - - 0.42 0.64 3.56 -
- - 2.1 - - 2.12 - - - - - - - 2.88 - -
- - 2.5 1.73 0.33 1.82 -3.44 -4.94 -2.56 -1.98 -0.02 -0.59 - - - -5.14
- -0.57 - - - 0.55 - 1.87 2.58 1.23 - - 0.91 - - -
-3.48 3.32 -0.28 -0.07 -1.36 0.97 -4.58 - -0.53 -4.86 -1.12 -1.61 - - -2.6 -3.7
- 2.75 1.16 1.94 -1.75 1.21 - -4.21 - - - - -0.97 - - -
-3.18 -5.25 1.34 1.9 1.92 2.4 - - -1.81 -2.48 - -4.14 - - - -
-1.23 2.87 -3.52 -4.78 -0.12 -2.15 -2.61 1.71 0.58 0.83 -3.45 -2.97 - -3.88 - -
- 0.72 1.25 1.58 - - - - - - - - 3.17 - - -
-4.59 - -2.69 -0.51 -0.59 -0.27 -0.48 0.39 - - -3.01 -3.12 1.52 0.96 2.25 0.83
- - -3.04 -1.1 -1.26 -0.82 1.43 -3.41 0.41 -1.24 2.63 1.89 - - - -
- - 1.83 -0.44 2.72 -0.14 2.0 -5.92 - - - - - - -2.7 -
- 0.9 2.71 -0.26 0.96 1.96 - -4.23 - -1.55 -2.51 -1.62 - - - -
-2.58 -2.31 1.86 1.83 0.01 1.01 -0.14 -1.37 -3.14 -2.01 0.07 -0.46 -1.11 -1.36 -1.36 -0.45
-6.49 - -0.49 -0.56 1.57 0.41 1.81 -6.03 - - 1.89 1.52 - - -2.81 -3.91
- - 0.79 1.28 2.9 1.79 -0.34 -7.93 - - -6.63 -3.18 - - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.