Heatmap: Cluster_38 (Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
-6.94 - 0.39 1.6 2.53 1.7 -0.49 -1.88 -0.54 -0.84 -3.86 -1.85 - -4.31 - -
- 4.0 - - - - - - - - - - - - - -
3.58 1.97 - -4.92 - -6.29 - - - -4.63 - - - -5.44 - -
-5.73 -2.16 0.73 0.64 1.36 0.75 2.12 -3.89 -0.37 -1.5 0.73 -1.06 -3.03 - -2.05 -2.15
-3.27 3.83 - -1.53 -3.33 -2.9 - - - - - - - -3.64 0.02 -
1.37 3.62 -1.06 - - - -1.73 - -1.47 - - - - - - -
- 3.95 -0.95 - - - - - - - - - - - - -
- - 2.2 2.53 -0.54 -2.3 - 0.61 -0.11 0.69 -0.6 - - - - -
- 2.28 - 0.03 - -0.34 0.03 -0.36 1.85 0.33 -0.64 -0.74 - 0.52 - -
-6.98 0.01 0.44 0.43 0.69 1.22 1.11 1.94 -5.99 - -0.2 0.55 - - - -
- - - - - 0.25 - - - - 2.97 1.78 - - 1.83 -
-7.05 -7.76 2.55 1.85 0.75 1.65 -2.61 - -3.24 -6.64 -1.14 -0.66 -4.74 -4.22 -2.06 -
- - 1.63 2.06 2.6 0.94 -0.52 -10.27 - - - -4.23 - - - -
- - 1.58 2.03 2.49 1.62 -2.62 -10.76 - - -4.25 -4.36 - - - -
- - - - - - - - - - - - - - - -
-2.01 3.98 - - - - - - - - - - - - - -
-0.04 - 1.04 1.01 -0.64 1.08 -1.13 -3.83 0.37 -0.58 1.04 0.35 - 0.42 - 0.05
-1.61 -0.41 -8.14 -5.22 -5.68 -5.17 -5.49 3.89 - - -8.47 -4.88 - - - -
- 4.0 - - - - - - - - - - - - - -
-4.43 4.0 - - - - - - - - - - - - - -
-1.85 -2.6 -3.39 - -0.45 -0.03 -1.15 3.17 -1.01 0.49 -0.56 0.08 -2.48 - -1.5 -2.6
- -0.54 0.01 1.51 -1.86 0.97 2.34 0.94 - - -1.33 - - - 0.9 -
- - 2.91 1.45 -0.86 1.85 -4.47 - -1.62 -2.15 -0.53 -1.63 - - - -
-4.93 -6.55 1.38 1.68 2.31 0.92 0.97 -0.97 -4.75 -5.61 -2.79 -0.69 - - - -
- - - - - - - - - - - - - - - -
-6.71 -0.01 2.17 2.24 -0.16 -1.57 -6.37 -4.02 -5.25 -4.13 0.81 1.38 - - -5.51 -
- - 1.19 2.64 2.03 1.22 -0.07 -7.57 - - -3.83 -4.35 - - - -
- - - - 3.23 1.89 -0.75 - - - - - - - 1.23 -
- -12.19 -10.63 -11.3 -8.5 -7.58 -5.34 -0.78 3.21 2.6 -4.69 -6.21 - - - -
- - -0.27 -0.03 2.82 1.24 1.12 -6.17 - - 0.51 0.23 - - - -
-4.45 3.67 -0.42 -1.33 -1.21 -0.11 -3.75 -2.1 -1.77 - -4.0 -4.11 - - - -
- - 2.08 2.14 1.14 1.61 -5.55 -4.0 - - 0.38 -0.79 -2.98 - - -
- 2.79 1.86 1.0 0.46 -1.6 -2.24 - - - -1.12 0.09 - - - -
- - - - - - - - - - - - - - 4.0 -
- - 0.97 -0.44 -0.2 -0.64 0.19 -3.53 1.07 2.13 1.11 0.92 - -6.22 - -
3.85 - -3.07 -2.74 - - - -4.13 - - - -2.52 - -2.25 -0.18 -
- - - 1.63 - - - - - - 0.97 3.45 - - - -
- - 3.59 1.35 -1.33 -3.06 -0.18 -6.72 - - - - - - - -
-5.81 - 0.67 0.84 1.27 1.15 2.9 -3.97 -6.06 - -2.97 -2.07 - - -3.73 -
0.05 - 0.58 1.24 - - - - 1.5 - - - - - 3.05 -
- - - - - - - 4.0 - - - - - - - -
-3.35 3.96 - - - -3.98 - - -3.37 -2.89 - - - - - -
- - 0.02 -0.37 1.12 2.29 0.18 -7.53 -5.65 - 1.36 1.78 - - - -
- - - - - - - - - - - - - - - -
- - - - 2.35 1.6 - -1.02 - - 2.89 - - - - -
- -5.21 1.78 2.29 2.28 0.53 -1.88 -4.91 -5.63 -4.19 -1.01 -1.12 - -6.11 -5.62 -
1.7 3.67 - - - - - - - - - - - - - -
-6.29 - 0.53 -0.11 0.77 0.56 1.88 -0.18 -6.51 - 1.57 1.53 - - - -
3.72 - -1.09 -1.34 -0.37 -1.71 - - - - - - - -1.85 -0.78 -
3.99 - - -3.54 - - - - - - - - - - - -
2.89 3.1 - - - - - - - - - - - - - -
-2.15 - 0.84 1.21 0.9 2.14 1.83 -0.4 - - -1.17 -0.76 - -3.84 - -
- - 0.56 1.89 1.69 -0.48 - -1.52 - - - 0.13 - - 2.44 -
- - 1.83 0.16 - -2.21 3.11 0.89 - - - -0.61 - - - -
- - - - - - - 3.25 - 2.11 1.14 - - - - -
- -0.72 1.65 1.07 1.49 2.74 -0.79 -3.52 - - - - - - - -
-4.78 - -2.11 -0.43 0.39 1.97 1.41 -3.64 -0.36 1.72 0.55 0.23 -3.66 -4.76 - -2.2
-9.29 -7.04 0.41 0.74 1.6 1.04 2.05 -0.96 -1.97 -4.01 0.38 0.71 - - -7.21 -
- - 0.83 -0.86 2.3 0.25 1.28 -0.56 - - 0.06 1.56 -3.44 - -1.47 -
0.56 3.58 -0.44 - - -0.47 - -1.09 - - - - - -0.62 - -
-2.84 - -1.98 -0.64 0.15 3.55 0.16 -2.33 - - -1.29 -1.39 - - - -
- -3.42 - - 1.35 3.52 -1.54 0.15 - - -2.2 -2.3 - - - -
- 4.0 - - - - - -6.65 - - - - - - - -
-10.61 - -1.76 -0.74 1.99 -0.48 3.3 -4.39 -5.45 -6.61 -2.45 -2.25 -5.91 -6.2 -3.77 -
2.38 0.63 2.1 2.3 -5.02 - -5.82 - - - - - - - - -
- - 1.66 0.99 0.79 1.43 - -1.42 0.23 1.61 0.33 -0.78 - - - -
4.0 - - - - - - -5.21 - - - - - - - -
-6.49 -10.99 1.84 2.14 1.45 1.88 -2.78 -3.97 -3.07 -2.92 -0.76 -0.88 -7.56 -7.66 -6.59 -
-0.79 0.05 - 2.49 - -1.05 -0.1 - - - - - - - 2.88 -
- - 1.71 1.04 0.11 2.26 0.53 -1.45 - - - - - -0.79 1.28 -
- - - - - - - - - - - - - - - -
- -5.93 1.91 2.24 1.86 0.66 0.42 -4.73 -3.9 -2.09 -2.2 -1.38 - - - -
- 3.46 0.41 0.16 - 0.79 - -2.82 - - -0.5 - - - - -
-0.82 - 2.43 - 1.43 - 1.89 - - - - - - - 1.86 -
-3.39 -3.14 0.4 2.84 1.34 0.45 - -2.93 - - 0.39 0.96 - - - -
- 2.9 1.37 1.32 0.89 0.26 - -3.66 - - -2.66 -2.77 - - - -
3.85 0.35 - - - - - - -1.93 - - - - - - -
-4.85 3.78 -4.65 -2.51 - -5.68 -5.32 -3.77 -0.99 -4.01 -1.07 -1.18 - - -1.17 -
-3.91 - 0.23 -1.25 1.62 0.12 1.05 2.25 - - -1.19 0.08 -1.25 - 0.31 -2.37
- - 1.39 1.57 1.31 2.58 0.78 -4.49 - -7.07 -7.03 -2.97 - - -4.81 -
- -2.87 - -5.09 - -4.88 - -0.34 2.77 3.03 - - - - - -
0.58 3.71 - - -1.79 - - - -0.93 -1.87 - - - -1.69 - -
- 3.77 -2.37 - -2.24 -2.4 0.28 - -1.8 - - -1.81 - - - -
- - - - - - - - - - - - - - - -
-2.23 -2.47 -0.32 - 2.26 1.85 0.83 0.65 -0.65 - 0.25 0.34 - - - -
- - 0.56 0.59 0.81 -0.43 2.2 -0.69 -2.52 -1.52 1.33 1.15 - - -4.78 -
- - - - - - - - - - - - - - - -
- -5.32 -3.81 -4.48 -0.77 -0.1 3.35 -0.86 1.0 -1.87 -0.86 -1.94 -2.89 - -1.92 -3.02
0.01 2.51 -0.71 -0.56 -0.81 0.79 0.4 -3.39 -1.66 -5.27 0.87 1.09 - - - -
- - - - 3.12 2.47 0.51 -1.48 - - - - - - - -
- - -2.42 -3.07 2.03 2.02 -3.86 - 0.09 0.67 1.7 0.45 -2.93 -4.06 - -
-1.08 3.61 1.4 - - - - - - - -0.49 - - - - -
- - - - - - - - - - - - - - - -
-3.34 -3.1 - 1.0 1.08 2.37 1.52 0.41 -0.34 - -0.24 - -0.6 - - -
3.94 - -5.35 - - -4.38 - -4.42 -3.77 -3.13 - - - - -1.46 -
-2.35 1.45 -0.17 -0.26 1.87 1.04 1.8 -5.82 - - -2.52 -1.62 -1.26 -1.35 -0.28 -
1.9 1.06 2.92 - - - 0.6 - - - - -0.97 - -0.72 - -
- - - - - - - - - - - - - - 4.0 -
-7.78 - 2.28 2.65 0.46 1.7 -3.01 -7.26 - - -4.3 -5.17 - -7.33 - -7.1
- -1.85 -2.88 -2.54 -0.75 3.73 - - - - - - -0.97 - 0.01 -
-4.34 -4.82 0.68 0.34 0.69 0.12 0.23 -8.55 -0.66 0.49 2.24 1.27 - - - -
-2.52 - - - 0.4 -1.77 2.55 1.04 0.84 - -0.07 0.41 - - 1.16 -
-3.83 -2.99 -0.89 -1.4 -0.92 -1.28 2.94 0.01 1.72 0.38 -0.81 - - -3.18 - -
3.97 -1.93 - - -3.23 - - - - - - - - - - -
-2.19 - - - 0.62 0.81 -1.05 3.47 - - -2.29 - -1.05 -2.15 - -
- 2.95 - - - -0.06 - 2.87 - - - - - - - -
- - 2.01 1.94 2.72 -0.51 -2.73 -2.13 - -6.23 -2.42 -1.98 - - -4.55 -
- - - - - - - - - - - - - - - -
- - - -0.45 1.93 - 1.54 - - - - - - - 3.1 -
4.0 - - - - - - - - - - - - - - -
-0.5 -1.24 3.18 0.23 -2.8 - -2.66 -5.69 - - - - - - 2.1 -
-4.28 - - - -1.79 -3.54 - 3.89 - - - -2.95 - - -0.61 -
0.77 -0.07 -1.92 -1.88 - - - -3.07 2.37 1.35 1.78 0.63 - - - -
- - 0.94 0.36 0.34 0.58 3.08 -4.62 - - -0.3 -0.41 - - - -
- -2.06 1.76 0.04 -2.97 -2.13 - 0.29 1.18 2.87 - - - -2.28 - -
-1.9 -0.5 - -2.73 0.76 -2.1 -1.15 3.34 -1.48 -2.42 - -0.49 - -2.06 -0.18 -
-1.84 - 0.11 -0.08 1.5 0.07 0.34 -5.47 - -3.79 0.99 2.69 - - - -
- - 2.02 0.26 2.2 1.6 1.01 -3.59 -1.97 - - -2.98 - - -0.64 -
-0.48 -1.05 -0.47 1.22 -0.79 -2.46 -2.18 -2.91 -2.84 -1.21 -2.74 -2.85 1.0 -0.66 2.56 0.29
- - - - - - - - - - 2.02 2.5 - - 2.66 -
- - -1.68 -0.7 -4.55 -3.24 0.52 -2.93 1.15 -1.92 2.62 2.24 - - - -
- - - - - - - - - - - - - - - -
- 4.0 - - - - - - - - - - - - - -
-0.45 - - - - -1.7 -0.01 2.94 0.91 1.14 -1.99 -2.1 - -0.84 0.23 -
-0.64 - 2.56 1.45 0.88 1.44 0.02 -5.18 - - -3.33 -0.36 -4.42 - -2.44 -
-7.03 -7.72 2.54 2.67 1.45 -0.37 -6.41 -5.82 -3.14 -3.51 -5.73 -5.79 - -9.69 -9.95 -
- 1.73 -0.21 -0.88 2.1 0.76 -0.29 - - - - 0.35 - - 1.68 -
- - - - - - - - - - - - - 0.77 3.84 -
-5.16 - -1.78 -1.71 2.41 1.79 0.96 -0.59 - - 1.39 0.0 - - -1.48 -
- - - - - - -1.89 3.56 - - - - - -0.4 1.67 -
- -1.22 1.43 1.15 1.86 1.01 -2.94 -3.92 -2.7 -1.64 -0.29 0.29 - - 1.2 -
- - 0.25 0.63 1.75 0.87 - - -0.04 0.28 1.28 1.49 - - -0.66 -
- - 3.29 1.9 -0.64 -3.03 -2.08 - - - -0.75 -0.12 - - - -
0.43 3.7 - -1.63 - -0.41 - -2.61 -1.39 - - - - - - -
-0.97 -0.46 -2.49 -2.16 0.44 -2.53 - 2.0 - -1.86 2.63 1.24 - - - -
- - 3.03 - - 2.97 - - - - - - - - - -
- - 1.48 - 1.61 3.35 - - - - - - - - - -
-9.62 4.0 - -6.91 -7.11 - - -10.48 - - - - - - - -
- - 0.42 1.34 2.48 1.13 - - - - -0.48 1.88 - - - -
3.02 -0.96 -3.26 -2.34 -3.54 -5.29 - 1.33 1.66 0.29 -4.58 - - - - -
-1.56 - -0.67 1.38 -1.98 1.44 -0.26 -4.06 - -2.99 2.6 0.85 - - -0.8 -
- - - - - - - - 2.37 3.43 - - - - - -
- - 1.58 1.26 1.72 2.18 1.1 -6.4 - - -3.27 -0.97 - -5.93 - -
- - -0.17 -0.69 2.4 0.57 2.88 -4.57 - - -2.47 -2.83 - - - -
- - - - - - - - - - - - - 4.0 - -
- 2.8 - - - -4.43 -2.48 3.12 - - - -2.83 - - - -
0.16 -0.49 1.6 1.34 -1.45 0.74 1.0 -0.6 - -0.34 - - - 0.39 - 0.86
-5.34 1.88 0.53 0.37 -1.68 -4.39 -1.15 2.49 0.16 -0.23 -0.65 -0.95 - - - -
- - -2.1 -2.69 -1.63 -2.22 -5.94 -1.2 -0.58 -3.47 3.03 2.5 - - - -
-1.86 -1.1 -0.44 0.23 - - -2.13 -0.17 0.99 -1.76 - - - - 3.22 -0.67
1.77 - -0.02 -0.47 1.73 1.41 -3.05 1.11 - - 0.45 -0.29 -4.16 -4.26 -1.6 -
2.69 2.26 -3.88 -2.42 -5.21 -2.47 -1.18 1.25 -0.03 -1.07 -6.67 - - - - -5.34
-0.21 0.16 - - - - -3.62 -0.75 2.6 2.54 -0.87 -1.16 - -1.72 - -2.75
- -0.14 - - - - -0.75 - 1.61 2.18 2.63 -0.44 - - - -
- - - - -0.37 - -1.17 -0.34 - - 2.74 1.05 - - 2.39 -
- 3.91 -2.12 -1.78 - - -1.21 - - - - - - - - -
-3.67 -0.87 0.62 1.59 1.4 0.81 0.89 -2.7 0.87 0.72 -0.81 -1.4 - - - -
- 4.0 - - - - - - - - - - - - - -
- - - - - - 3.45 - - - - 2.35 - - - -
-3.15 1.25 -4.67 -3.33 -2.54 1.9 1.87 -2.23 2.14 -1.22 - -4.1 -2.75 - -1.78 -1.88
- - 2.31 1.64 1.44 -0.32 -1.95 -1.12 - - -0.62 - - - 1.61 -
- -5.46 2.45 2.52 1.03 1.45 - - - - - - - - - -
-1.08 1.67 1.45 -0.54 0.84 - -0.96 -1.72 1.02 -0.24 1.79 - - - - -
-1.68 -0.64 1.21 1.45 0.72 2.21 -1.69 -1.58 -1.01 -2.06 0.45 0.0 - - - -
-6.32 -6.08 2.23 2.18 1.0 1.69 -0.87 -4.83 -5.32 -5.85 -1.09 -1.27 - -6.68 - -
- 3.95 - - - -2.45 -4.66 - -3.43 - -2.33 - - - - -
- - 1.96 2.34 - - - - - - - - - - 2.81 -
- 3.95 -3.74 - -2.61 - -4.42 -3.59 - - - -2.18 - - - -
- - 2.05 2.0 0.84 2.46 -6.41 -8.62 -5.82 -4.68 -1.72 -2.49 - - - -
3.99 - - - - - - -4.92 - - - - - -3.03 - -
- - - - - - - - - - - - - - - -
- - - 0.07 2.19 0.7 - - - 1.37 - - - - 2.63 -
-6.85 -1.64 0.39 0.64 1.93 1.78 2.36 -4.06 - - -2.8 -3.17 - - -3.17 -
- - 2.55 2.32 0.88 1.58 -2.2 -8.12 - -8.18 -5.14 -4.79 - - -4.91 -7.0
- - 3.24 1.65 1.11 - 0.32 - - - - - - - - -
- 4.0 - - - - - - - - - - - - - -
-7.66 - 1.98 0.39 -2.97 -3.55 3.36 -4.69 - - -3.04 -3.21 - - - -
-7.34 2.41 -5.98 - -5.85 -6.02 -3.92 1.47 0.29 2.67 -2.59 -6.02 - - - -5.78
- - - - 0.5 1.58 - - 1.41 1.05 1.83 1.72 - - - -
- -0.51 - -1.61 - -1.98 - 3.66 -0.37 -1.31 -1.28 - - -1.13 - -
- - 0.54 0.86 - 0.5 - -1.37 2.32 2.57 - - - - - -
-1.52 - -0.72 - - - - -1.05 - -0.09 1.53 3.42 - - - -
- 1.53 - - - - - 3.71 - - - - - - - -
1.27 3.33 -0.66 -2.15 0.32 -2.98 -2.03 -0.66 -4.36 -2.98 -2.95 -3.37 - - - -
-6.54 -0.28 1.54 2.17 0.82 1.59 -4.27 -1.07 -2.03 -0.26 0.0 -1.41 - - - -
- - - 4.0 - - - - - - - - - - - -
- 4.0 - - - - - - - - - - - - - -
- - - - - - - -0.54 - - 1.58 2.05 - 0.65 2.72 -
2.73 2.99 - - - - - - - - - - - 0.49 - -
- 3.99 - -5.98 - -5.35 - - - -5.68 - - - - -3.43 -
- - 2.7 1.45 - 0.59 -0.04 -2.75 - -1.07 -1.03 -1.14 - -0.87 - 1.1
- - 1.36 2.1 2.58 1.05 - - - - -2.56 -0.16 - - -4.98 -
-2.2 -0.14 -1.39 0.53 - 2.43 -0.74 -0.05 1.65 1.42 - -1.82 - - - -
-4.49 3.79 - -3.38 -1.26 - -4.38 0.1 - - - -2.16 - - -1.77 -
- - 0.37 0.42 2.8 0.34 1.6 - - - -2.42 0.93 - - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.