Heatmap: Cluster_24 (Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
-5.27 -2.87 2.74 2.19 -0.45 0.57 -4.84 -1.19 -0.7 -0.03 -5.65 -3.45 -8.47 -7.99 -2.37 -8.7
- 2.99 2.52 - - - - 1.2 - - - - - - - -
- - -0.14 0.84 -0.42 0.91 -4.81 - - - -1.89 - - -1.75 3.33 -
- 4.0 - - - - - - - - - - - - - -
-0.33 -1.43 -0.13 -0.98 -1.95 -0.9 0.57 -1.6 1.52 0.95 -1.26 -1.9 - -2.61 2.37 -
- - - -0.95 - - - -3.45 - - - - -0.69 -2.79 3.87 -
- - - - - - - 0.37 - -0.18 - - - 0.02 3.68 -
-3.61 -4.24 1.64 1.49 1.29 1.31 -3.21 -0.89 -3.46 -3.62 -4.4 -7.01 -2.61 -1.98 1.86 -3.82
-1.3 -0.92 -1.18 -1.45 -1.68 -1.96 -2.21 -2.85 -0.34 -1.18 -0.27 -2.63 -1.98 -1.12 3.3 -0.79
-3.28 -6.02 -0.02 -0.06 1.46 1.7 -1.0 -1.33 -2.79 -1.97 0.38 -1.74 -0.74 -1.15 1.92 -2.29
- - 1.56 1.53 1.71 1.42 -3.42 -1.74 - - -1.24 1.75 - -4.25 - -
-3.83 1.53 -1.06 -3.73 -0.92 1.93 1.36 -0.24 -1.49 -3.43 -0.59 -0.91 -2.14 -0.65 1.16 -
- 3.86 -2.03 - - -1.06 -3.29 -2.99 - - -1.43 -3.03 - - - -
- 3.86 -2.03 - - -1.06 -3.29 -2.99 - - -1.43 -3.03 - - - -
-5.19 -3.42 1.74 2.69 0.8 1.82 -5.31 -5.74 -3.94 -4.44 -2.51 -2.42 -6.25 -6.32 -1.94 -7.98
0.91 - 1.45 -0.22 - 2.0 - -2.21 0.02 - - - - - 2.41 -
-5.87 -1.02 -3.93 -1.86 -2.35 -3.03 -3.58 -0.71 1.93 2.07 1.76 1.39 - -6.28 -4.22 -4.31
-5.48 -6.22 2.14 1.77 0.14 2.12 -2.47 -4.71 -2.69 -3.09 -3.25 -2.99 -1.84 -2.89 0.43 -2.34
-2.76 1.87 1.15 0.19 0.24 1.88 -0.01 -4.93 -4.85 - -1.55 -1.34 -2.91 -2.69 0.79 -2.62
- 3.15 -1.99 - - - -0.08 0.06 1.16 -0.37 - - - - 0.9 -
-5.07 -4.81 0.63 0.09 2.53 1.22 -1.09 0.71 -1.72 -0.71 -3.65 -3.78 -2.41 - 0.89 -
1.08 - 2.88 - - - - - - - - - - 2.7 - -
-2.32 -2.74 0.48 0.58 1.44 1.27 -2.1 -1.9 -0.91 -1.56 -1.79 -1.94 -2.02 -1.64 2.25 -1.38
-2.57 -5.25 -4.1 -3.86 -2.13 -2.69 -0.1 2.09 2.72 1.68 - -6.12 - -5.44 -1.82 -
-2.99 - 0.84 0.14 2.16 1.15 2.27 -1.79 - - -2.57 -0.04 - - - -5.13
- - 1.82 0.64 1.74 1.45 2.06 -5.46 - - -3.42 -1.82 - -6.25 -2.18 -5.28
-2.89 - 0.05 -0.47 - - -2.21 -1.6 -1.56 -2.5 1.54 0.75 - -1.3 2.94 -1.33
-0.8 -3.45 1.64 0.46 0.13 0.21 -4.63 -4.01 -4.4 -4.34 -3.31 -2.83 -1.04 -1.33 2.79 -1.58
-2.79 -1.5 -0.48 -0.25 -0.66 0.25 -1.9 -1.12 2.83 1.25 -2.15 -3.26 -2.92 -2.48 0.03 -2.15
-2.57 -2.37 1.49 1.41 0.55 1.11 -2.88 -3.93 -4.09 -2.33 -0.57 -2.78 -1.3 -2.68 2.17 -2.29
-1.19 -0.09 0.38 -0.3 -3.09 0.12 - - 0.37 -0.24 -0.54 -0.64 -1.25 -1.19 2.72 -1.39
3.59 - - - - - - -4.59 - - - - - - 1.98 -
-4.94 -4.68 0.04 0.4 2.27 2.25 -1.86 -1.24 -1.4 -1.67 -1.56 -3.09 -2.12 -3.03 0.67 -2.24
-3.88 -4.93 0.05 -0.58 -0.19 0.19 0.0 -0.08 -1.3 -2.76 -2.17 -3.3 0.79 -0.3 2.43 0.5
-2.02 -1.79 0.36 -0.56 -2.1 -2.46 0.0 2.51 0.8 0.67 -0.63 -1.39 -2.17 -2.2 0.25 -1.36
- - 1.71 2.07 1.18 1.94 - - -6.57 -6.83 0.8 -0.57 - - -6.55 -
- 0.93 0.47 2.26 1.6 0.76 - - - - - - - -0.71 1.36 -
- -1.37 1.61 1.42 1.39 1.57 -3.03 -2.29 - - - - -1.97 - 1.51 -0.15
-5.74 - 2.03 1.96 0.21 -1.82 -2.53 - -3.46 - 1.54 0.62 - -2.08 0.7 -
-9.87 - 3.06 1.25 1.99 -0.04 -2.34 -10.1 - -11.47 -4.8 -3.0 -10.18 - - -
-1.47 -3.53 -3.85 -3.36 -2.57 -4.04 -4.88 3.75 -4.14 -5.4 -5.37 -4.16 - -3.63 0.44 -4.79
- - 0.79 1.37 2.64 1.34 -1.47 -2.74 -1.0 -2.03 -0.22 -0.3 - - - -
- - - - 0.31 0.14 - - - - 1.85 0.74 - - 3.07 -
-0.69 3.38 -1.82 -1.24 -0.07 -0.06 -3.95 -1.17 -2.38 -3.64 -3.6 -3.71 -1.78 -1.82 -0.46 -3.48
-2.65 -3.99 0.94 0.2 -0.73 -1.49 -0.95 -3.78 -1.29 -0.82 - - - -0.63 3.25 -
-1.34 - -0.17 - - -0.88 - - - - - - 0.04 - 3.72 -
-0.5 0.49 0.68 0.81 1.17 0.84 -1.43 -1.96 -1.32 -2.04 -0.77 -0.99 0.14 -0.21 0.21 0.01
-4.43 -1.82 -1.56 -1.49 -1.78 -1.47 -3.7 1.28 1.9 2.7 -1.17 -1.36 -6.15 -4.58 -0.6 -4.98
-3.67 - 3.25 0.04 0.95 -0.3 - -5.19 -5.36 -4.3 -3.1 -2.91 - -2.92 1.07 -5.15
-2.07 0.48 - - - - 0.15 -2.27 - - - - - - 3.71 -
- - 0.63 1.92 0.72 1.92 - -3.38 -3.97 - - -2.39 -2.63 -1.72 2.09 -2.75
-3.75 -6.79 1.27 1.86 0.61 1.09 -0.89 -3.38 -3.56 -3.32 -3.33 -4.5 -1.46 -1.88 2.13 -2.25
- - -2.71 -1.38 2.23 1.22 2.03 -1.29 -2.14 - 1.44 -1.14 - - -0.82 -
- - - - - - - - - - - - - - 4.0 -
-2.43 -2.73 1.36 1.1 1.63 1.36 -2.41 -0.6 -1.74 -2.9 -2.75 -4.97 -2.12 -3.03 1.76 -3.29
-3.16 -3.41 0.96 1.21 1.25 1.21 -1.42 -1.95 -1.62 -1.68 -1.4 -2.5 -1.48 -1.97 2.07 -2.29
-2.09 -2.67 -1.34 -1.24 -1.96 -0.81 -1.85 -1.36 -1.16 -0.72 -1.86 -4.55 0.9 0.1 2.63 1.49
1.03 -0.69 -1.56 -1.72 -1.55 -1.79 -2.01 -3.74 2.54 -0.19 1.22 0.64 - -3.32 0.07 -
-3.16 -4.48 1.38 1.58 0.89 1.12 -3.18 -2.14 -4.12 -3.8 -2.17 -3.84 -2.54 -1.75 2.29 -3.1
-3.73 3.99 -3.9 - - - - - - - - - - - - -
-2.66 -2.43 -1.13 -1.44 -1.66 0.25 -3.26 -3.94 -2.98 - -3.89 -4.0 -1.1 -0.61 3.5 -1.22
-1.05 -1.59 0.39 0.86 0.91 1.25 -1.45 -1.41 -0.9 -1.26 -1.22 -0.95 -0.56 -0.69 1.76 -1.04
1.61 2.43 - - - -0.18 - - - - - - - - 2.74 -
-0.66 -4.35 -0.15 0.31 -0.26 -0.36 1.8 -0.65 -0.75 -1.36 -0.6 -1.66 -1.01 -1.29 1.99 -0.7
-1.69 - 1.21 3.17 -1.02 0.61 - -5.39 - - - - - -2.92 1.15 -
-4.26 -0.28 1.12 1.37 1.5 1.71 -0.8 -1.94 -2.17 -1.94 -1.92 -2.64 -1.16 -2.04 0.58 -1.5
-2.95 -3.85 1.09 1.15 1.38 1.45 -1.79 -1.79 -2.88 -3.29 -2.53 -3.3 -1.47 -2.18 2.07 -1.97

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.