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Heatmap: Cluster_50 (Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
- 3.11 - - - - - - - - - - - - 2.88 -
-3.11 - 1.09 0.36 0.22 1.33 2.86 -6.56 -3.93 -2.54 -0.92 -0.41 - - - -
-7.28 -4.09 -0.05 -0.65 -2.13 1.3 -3.64 -0.95 2.81 1.62 -2.0 -0.56 -6.07 -7.58 - -6.6
- - - - - - - - - - - - - - - -
-5.3 -0.12 -1.75 -2.42 0.05 0.25 0.85 0.03 -1.41 -1.63 2.23 1.81 -2.16 - - -1.29
0.3 0.8 - - -0.03 0.82 0.76 -0.13 - - - 1.01 - 1.24 1.73 -
-5.98 -2.07 1.18 1.64 0.81 1.66 -1.55 -4.3 -1.53 -1.54 1.29 0.94 -7.96 -9.06 - -
1.96 - - - - - - 3.6 - - - - - - - -
- - 2.0 1.14 -0.32 1.82 -2.92 -4.35 - 0.32 1.15 0.52 -1.34 - - -
- - - 4.0 - - - - - - - - - - - -
- - - - - 4.0 - - - - - - - - - -
-2.84 -2.27 -0.52 1.52 1.79 1.61 -0.85 -1.84 -3.46 - 0.68 1.28 -2.13 -1.9 - -3.25
- - - - - - - - - - - - - - - -
- - - - - - - - - - - - - 3.01 - 2.99
- - - 4.0 - - - - - - - - - - - -
- - - 3.56 - - - -0.17 - - - - - 1.72 - -
- - - - - - - - - - - - - - - -
-0.48 0.98 - - -0.27 3.31 1.02 -1.37 - - - - - -4.79 - -2.82
-5.17 -3.92 -1.02 -0.73 -1.93 -0.17 0.2 -1.07 -1.23 -4.34 1.55 1.95 0.19 0.46 0.25 0.07
- - - - - - - 0.44 3.17 1.41 - - 0.64 - - 0.52
- - 2.97 2.34 - -0.61 - -3.82 - - - - -0.25 - - 0.62
- - - - - - - - 1.85 - - - - 2.06 - 3.04
- - - 3.85 - - - 0.65 - - - - - - - -
-1.89 -3.21 0.44 -0.06 0.47 -0.46 -6.04 -0.09 -1.88 -0.31 1.55 2.64 - - - -
- -0.41 -1.29 - -1.45 0.37 3.07 0.69 - -3.19 0.03 0.83 - - - -2.11
-6.67 -0.22 0.9 1.46 0.84 -0.59 0.1 0.88 1.39 0.36 -0.95 -1.26 -2.64 -3.47 - -4.08
-2.51 2.27 -0.74 - 1.2 - - -4.39 1.15 1.89 - - 0.18 - - 0.05
-1.25 - 1.72 1.66 2.41 - - - 0.35 - - 1.34 - - - -
-1.73 -2.51 0.78 1.86 2.7 0.76 -0.9 -4.5 - - -0.1 - - -1.01 - -
- - 1.33 1.25 2.26 2.07 -1.9 - - - 0.88 - - - - -
- - 0.43 0.64 - -2.54 3.6 -2.22 - - -0.83 - - - - -
- - 2.81 - - - - -0.38 0.63 1.69 - - - - - 1.78
-0.97 3.5 - - - - -0.89 -0.52 1.24 -3.19 -2.15 -2.52 - -4.62 - -
- -0.49 0.41 -0.02 1.76 0.8 1.15 1.45 - - -0.89 -1.58 0.32 - - -0.39
- -0.29 - - - - - - - - 0.89 1.37 - - 3.12 1.02
- - - - - - - - - - - - - - - -
- -2.05 -0.98 0.36 1.24 1.58 1.9 -2.2 - - 1.05 1.18 - - - -1.65
- -2.01 0.03 0.88 1.14 1.76 2.54 -2.27 - -2.87 -2.83 -1.35 -1.66 - - -1.78
- - - - - - - - - - - - - - - -
- - - - - - -3.8 3.38 1.26 1.66 - - - - - -
- 3.04 - -0.04 - - - - - - - - - 2.76 - -
0.47 - -0.49 -1.16 2.88 0.8 -1.17 1.19 - - -0.81 0.09 - - - -
- 3.98 - - - - - - - - -5.71 - - - -2.38 -
1.56 0.2 0.62 1.29 -1.78 -1.93 -2.12 2.32 -1.5 -4.25 -1.63 -0.32 -1.0 - - -3.12
- - -3.77 -3.27 -4.65 -5.22 -1.1 -3.35 1.27 1.94 2.18 2.12 -4.86 - - -
-8.26 -0.96 -4.46 -3.61 -4.71 -3.96 -1.19 2.45 2.26 2.13 -3.09 -4.71 -6.57 -8.25 - -8.28
- - - - 2.27 3.15 - - - - - 1.19 - - - -
-10.42 4.0 - - - - - - - - - - - - - -
-4.59 -2.13 -3.83 -3.24 -3.43 -3.19 1.65 0.51 -0.89 1.61 1.82 1.51 -4.23 -1.42 - -1.36
-1.84 -2.3 0.94 1.47 1.16 0.86 -0.14 -1.73 -0.07 -2.43 -0.28 -2.09 0.04 0.14 -1.79 -0.08
- - - - - - -0.22 3.92 - - - - - - - -
0.13 2.02 -0.13 0.18 -2.31 -1.39 -2.42 -2.04 0.94 1.36 0.47 0.43 -3.06 - - -1.16
- 0.16 0.22 0.56 - - -0.46 -3.19 - - - -0.19 2.71 - - 2.0
-4.04 - 0.89 0.56 1.96 3.04 -3.79 - - - - - - - - -1.33
- - 4.0 - - - - - - - - - - - - -
-6.67 -1.67 2.43 1.95 1.34 0.5 0.34 -2.34 -3.71 - -2.62 -1.85 -1.93 -2.75 - -4.08
- - - - - - - - - - - - 4.0 - - -
-0.28 -4.17 0.31 0.29 0.85 0.38 2.17 0.67 - - -0.89 0.51 -0.33 -2.84 -2.36 -1.46
- - 2.27 1.68 0.88 0.92 -1.11 -2.9 -0.57 -0.06 0.24 -1.65 - -1.02 - -
- -4.12 1.16 1.66 2.34 1.92 0.38 -2.28 - - -4.54 -3.05 - - - -
1.32 0.62 - - - - - -3.82 - - - - 1.75 -1.93 0.14 2.84
-4.41 -2.59 -0.77 -3.24 -1.87 - 0.27 3.72 -2.99 -2.93 -2.9 - - - - -
2.66 0.18 -2.61 -0.68 - - - - 0.81 2.58 - - - - - -
-6.87 -1.59 -0.2 0.04 1.5 0.42 1.24 -1.08 -0.27 -0.22 1.15 1.51 - - - -
1.58 - - - 1.34 1.24 - -1.51 - 1.33 - 0.28 - 0.45 - 1.42
- - 0.96 1.95 2.45 2.17 -5.57 -2.64 - - - - - -8.33 - -4.77
-3.46 -0.91 3.3 2.46 - - - - - - - - - - - -
- - - 0.2 - - - 3.51 - - - - 1.78 - - -
3.97 - - -1.5 - - - - - - - - - - - -
- - - - 1.51 0.36 0.71 -0.71 - - - - - - 3.27 -
- - - -7.4 - - -9.01 0.01 - -8.66 3.19 2.55 - -8.53 - -7.56
-1.97 - -2.2 3.11 -0.48 -2.24 - -0.73 0.1 1.79 -1.55 -2.23 -1.87 - - -
-2.6 -5.42 0.98 2.22 2.48 1.14 -0.37 -2.05 - - -3.73 -1.79 - - - -6.34
- - 0.16 1.13 2.41 1.66 -0.16 1.55 -2.42 - -2.32 - - - - -
-9.72 0.84 -6.94 - -4.28 -3.09 -5.02 0.58 3.02 2.08 -5.95 -2.62 - -8.12 - -
-3.8 -3.26 0.62 0.47 1.48 0.82 -2.27 - - - - -2.39 1.85 -0.09 0.65 0.88
- 1.77 - - - - 2.2 1.31 - - - - 2.46 - - -
1.05 1.28 0.93 1.42 -0.12 0.73 -1.92 -1.46 -1.64 - - - - -1.43 0.64 0.54
- - -0.25 0.78 -2.12 1.88 0.47 1.76 -0.36 -1.62 0.22 1.31 - - - -
- - - - - 2.29 - 1.18 - - - - 3.14 - - -
- - -0.2 -0.4 0.47 2.49 -0.49 -0.46 -0.51 1.38 -0.64 0.57 - - -1.02 -
- - 1.02 2.18 2.21 1.46 -0.15 -5.43 -6.17 -4.79 -2.04 -1.21 -3.26 -5.06 -2.76 -2.96
- - 1.19 0.95 -0.28 1.18 -1.07 - - - - - - - 2.48 1.39
3.98 - - - - -4.42 - - - - - - - -2.57 - -
- - 0.25 0.33 1.52 1.21 0.69 -0.58 1.01 0.17 -1.52 -2.05 -0.17 -0.93 -3.1 -0.29
- - - - 2.62 - - - - - - - - 3.3 - -
-10.24 -4.64 0.35 1.78 0.47 1.16 0.6 -1.77 0.73 -2.17 1.22 0.69 - - - -6.64
- -1.93 - - - - - - - - - - 3.04 - - 2.91
-6.52 - 2.37 2.57 0.97 1.13 -6.45 -5.42 -3.22 -3.76 -2.37 -1.52 -8.27 - - -
- - - - - - - - - - - - - 4.0 - -
- - 2.23 0.59 2.15 0.91 -2.11 - - - 0.81 0.44 - -2.63 - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.