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Heatmap: Cluster_140 (Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
0.17 2.32 - - - -2.73 - - 2.59 -0.05 - -1.12 - - 1.19 -
-2.12 - 0.33 2.3 0.46 -0.12 0.31 - - - - -3.91 - - 2.58 -
-3.13 3.75 - - -2.65 -2.77 -2.77 -4.17 - - -0.19 -0.3 - -5.09 -2.02 -
- - - - - - - - - - - - - - 4.0 -
- -2.84 1.48 1.12 1.9 0.92 - -2.31 -1.63 - - - - - 2.25 -
- - 2.41 2.84 0.12 - - - - - - - - - 1.29 -
-6.33 -9.02 1.75 1.7 1.42 2.59 -4.24 -8.04 -9.06 -7.58 -1.58 -1.83 - - -7.34 -
-1.45 - - - - -0.58 - - - - - - - - 3.9 -
-0.91 - - - - - - 0.38 1.42 0.48 - - - - 3.33 -
- - - - - - 2.06 - - - - 1.04 - - 3.29 -
- - - - - - - -7.18 - - - - 0.97 1.17 3.35 0.64
- 3.78 - - - - - - -2.81 - - - - - 1.06 -
- - - - - 0.91 - - - - - - - - 3.82 -
- - - - - - -2.71 0.5 2.85 1.92 -0.57 -1.41 - - 1.26 -
-0.78 - - - - - - - - - - - - - 3.95 -
- 3.62 - - -1.24 -1.39 - - - - - - - - 1.52 -
-2.58 0.48 1.08 0.78 1.43 1.35 -1.53 -1.69 -0.57 -0.56 0.61 -1.27 - -2.32 0.29 -
- - - - - - -4.4 3.96 - - - - - - -1.43 -
1.27 - - - - - 0.5 3.6 - - - - - - - -
- - - - - - - - - - - - - - 4.0 -
- - 1.38 0.91 0.28 2.25 - -2.1 - - - - - 0.38 1.45 0.35
-4.73 - - - -2.17 -0.0 - 0.24 2.6 2.68 - -0.71 - - -1.0 -
-6.12 - 1.73 1.77 1.42 1.79 0.06 -4.32 - - -3.99 -1.06 -3.74 -4.38 0.32 -3.28
- - -0.09 0.25 - - - - - - - - - - 3.79 -
- - - - - - - 0.15 - 0.12 - - 0.35 - 3.65 -
- -3.26 -2.14 -3.57 -1.64 -0.34 -0.57 0.58 2.61 1.61 0.54 0.7 -6.38 - -3.82 -
- - 0.48 -6.08 0.49 -0.52 3.55 -4.43 - - -3.42 -0.9 - - -3.53 -
- - -2.08 -0.83 -2.26 - -1.92 -8.32 - -6.61 2.69 3.04 - - -4.36 -
- - - - - - - - - - - - - - 4.0 -
-9.18 - 1.91 2.18 0.98 1.7 -3.56 -5.4 -7.71 -4.33 0.27 0.12 - - -4.43 -
- - - - - - - -1.31 0.94 0.52 - - - 0.19 3.47 -
-3.61 -3.3 -0.44 -1.3 0.73 0.91 -0.79 1.67 -4.05 -3.81 2.05 1.57 -4.69 -5.79 -3.71 -
- - - 1.26 - - - - - - - - - - 3.77 -
- 3.92 - - - - - - - - - - - - -0.19 -
- - - - - - - - - - - - - - 4.0 -
-4.65 - 1.19 1.09 0.05 1.2 -3.52 -3.92 2.08 1.35 -1.77 -1.17 - -4.62 -0.96 -
-5.04 - 1.49 1.04 1.8 0.82 -1.8 -9.67 -3.89 -6.97 1.1 1.74 - - -7.1 -
-7.8 - 1.73 1.69 2.33 1.25 -4.66 -8.8 -3.21 -5.68 -0.52 0.23 - - -6.43 -
-5.16 -4.48 -1.7 -2.35 -3.82 -3.68 -3.47 2.66 1.4 2.6 -4.68 -4.36 - -9.06 -4.67 -6.5
- - - - -1.91 -2.66 3.87 -3.96 - - - - - - -0.15 -
-0.31 - 0.98 -0.49 1.47 2.6 - -3.48 -1.25 - - - 0.09 - 1.06 -
0.76 - -0.03 0.3 - - - -2.69 - - 0.64 0.53 - 0.78 2.85 -
- - 1.59 1.93 2.6 - - - - - - - - - 1.65 -
- - - - - 0.25 - - - - 2.53 - - - 3.17 -
- - -0.58 0.94 -0.08 -2.48 - - - - 2.74 2.46 - - -3.25 -
0.52 1.01 1.38 1.72 0.18 - - - - - 0.75 - - - 1.94 -
1.84 - - - - - - - - - - - - - 3.64 -
- 3.9 - - - - - - - - - - - - 0.07 -
2.14 -2.1 - - - - -7.07 - -4.24 -4.77 -2.01 -4.84 -0.1 -0.13 3.05 -0.29
- - 1.88 2.23 0.83 -0.84 0.04 -1.69 -1.52 -0.01 -0.1 -0.21 - - -0.27 -
- - - - 0.81 - - - - - - 1.24 - - 3.57 -
-6.2 -4.96 -1.57 -0.46 -3.66 - -3.24 -8.04 2.27 3.1 -0.53 -1.35 - - -2.49 -
3.82 - - - - - - - - - - - - - 0.91 -
-6.39 - -3.03 -2.65 -1.49 -1.21 3.43 -2.09 -4.99 -4.34 1.61 -0.68 - - -2.68 -
3.95 - - - -4.35 -3.51 - -5.03 - - - - - - -1.6 -
- - 2.07 1.81 1.33 1.74 0.23 -5.88 - - -3.46 -0.4 - - -1.31 -
- - - - - - - -0.58 0.36 - - - - 0.58 3.65 -
- -1.25 1.43 1.06 1.06 2.64 -2.29 -5.75 -5.15 -3.24 0.12 -0.41 - -6.23 -1.83 -
- - - - - 2.23 - - - - - - - - 3.5 -
-3.43 - 2.55 1.62 2.07 0.94 -4.0 -3.92 -7.49 -4.43 -1.8 -1.37 - - -5.16 -
- - - - - - - 3.75 - 0.25 - - - - 0.47 -
- - - - - - - 1.21 - - - - - - 3.77 -
- - - - - 1.46 -0.19 - - - - 1.09 - - 3.36 -
- 3.96 - -4.98 - - - -6.37 - - - - - - -1.42 -
- - - - - - - - - - - - - - 4.0 -
- - - - - - - 3.22 -1.24 - 1.35 1.41 - -1.58 -0.51 -
- - - - - - - - - - - - - - 4.0 -
-7.91 -8.67 1.77 0.84 2.0 1.35 -0.46 -7.05 - - 0.18 0.93 - -7.27 -1.2 -6.3
- - - - - - - - - - - - - - 4.0 -
-9.23 -7.39 -3.86 -3.87 -1.02 -1.96 2.17 1.14 1.4 0.96 1.11 0.69 - - -4.56 -
- - - - - 0.38 - - - - - - - - 3.88 -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.