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Heatmap: Cluster_93 (Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
- - -0.87 -0.25 0.61 0.73 - -5.11 1.7 1.44 1.91 0.76 - - - -
- 3.98 -6.19 -2.31 -9.52 -8.69 -10.32 - - - -8.99 - - - -6.77 -
-6.24 -6.99 1.57 2.49 2.05 1.39 -3.65 -8.1 - -5.81 -1.87 -1.97 - - - -
0.25 - - -0.22 -2.54 -0.2 - 3.67 - - - -2.68 - - - -
- 1.75 -1.68 - - - - -4.34 2.9 1.54 -0.01 -0.11 - - - -
- - 2.05 - - 0.42 -1.79 - - - - - - - 3.35 -
- - 0.66 2.22 0.21 2.22 -0.86 -4.11 - -5.29 1.44 -0.78 - - - -
-1.08 -0.83 - - - - -2.55 3.8 - - -1.22 -1.33 - - - -
- - 0.69 1.43 2.56 0.89 1.88 -5.26 - - -3.87 -3.98 - - -3.63 -
- - - - - - - - - - - - - - - -
- - - - 3.64 - 1.83 - - - - - - - - -
-5.81 - -2.12 -1.0 0.1 -0.49 2.58 -3.12 -2.0 -4.27 0.58 2.48 - - - -
-5.62 - 1.01 0.11 0.27 2.59 1.52 -3.3 - -6.51 0.92 -0.31 - - - -
-1.15 - -0.12 0.56 -0.44 -0.47 -1.7 -2.23 -2.44 -2.38 1.11 2.4 -0.35 -1.71 1.18 -
2.16 -0.92 - - 1.81 1.98 - -0.4 - - - - - - - 1.47
- - 1.18 0.95 -0.75 0.08 3.08 0.32 - - -2.79 -2.9 - -2.65 - -
-5.85 - 0.01 -0.05 1.93 1.52 2.23 -0.08 -3.45 - -0.45 -0.21 - - - -
- -0.17 2.82 - 0.62 - - 1.14 - - - 2.1 - - - -
-3.81 - - -0.7 0.56 0.93 -0.0 -0.92 0.71 -0.4 0.95 -0.15 1.69 -0.56 - 0.35
- - - - - - - - - - - - - 4.0 - -
- - 2.1 2.03 0.61 1.04 -1.25 -1.0 -1.44 -0.18 0.58 -1.45 - - - -
- -2.68 1.64 0.28 1.8 2.59 0.94 - - - - -3.47 - - - -
-0.3 -0.05 1.82 3.42 - - - - - - - - - - - -
-2.89 -2.75 0.27 1.9 1.06 1.31 -1.06 -4.46 -0.5 -2.19 1.72 0.49 - - - -4.03
-1.3 - 1.1 2.35 1.16 1.79 -3.78 - - - 0.36 0.26 - -3.29 - -
-3.95 - 1.0 1.19 2.73 2.02 -4.49 -6.8 - - -1.08 -1.12 - - - -
-5.95 0.73 0.67 0.19 1.2 0.18 0.14 2.08 -1.22 -2.89 -0.07 0.39 - - - -
- - - - - - - 1.84 - - - 1.04 - - 3.37 -
-4.58 2.05 0.07 0.15 0.67 -1.1 2.5 0.08 -5.93 -4.28 -3.25 -2.77 -3.56 -3.86 -2.59 -1.99
- - - - 4.0 - - - - - - - - - - -
- - -3.1 -1.23 - - -3.92 3.02 2.51 0.66 - -4.28 - - - -
- -2.46 -2.99 -2.39 0.52 0.17 1.17 0.78 0.49 -1.35 1.88 1.81 - - - -
- - 1.63 - 2.08 2.18 1.54 0.3 - - - - - - - -
- - - - 4.0 - - - - - - - - - - -
2.83 3.15 - -6.75 - - - -7.73 - - - - - - - -
- - - - - - -1.92 -3.17 1.9 3.38 -1.17 0.05 - - - -
- - - - - - - 4.0 - - - - - - - -
-1.16 - - - - - - 3.45 - - - - - -0.16 1.91 -
-0.97 - 1.4 - -0.05 1.59 2.85 -2.84 - - - - - 0.63 - -
- - - - - - -4.25 3.04 1.8 1.51 -2.92 - - - 0.31 -
- - - - - - - - - - - 4.0 - - - -
- -2.72 -0.03 -3.39 - -0.95 3.83 -5.39 - - - - - - - -
-3.01 3.91 -6.05 - -3.92 -5.09 - -4.88 -3.49 -2.26 -2.39 -4.5 - -5.23 -3.16 -
1.83 -2.83 2.13 1.77 1.37 -0.23 -7.44 -6.53 -4.37 -4.79 -1.41 -0.74 - - - -
- 4.0 - - - - - - - - - - - - - -
- 4.0 - - - - - - - - - - - - - -
- - 1.95 0.75 2.28 1.94 0.32 -7.67 - - -3.0 -1.39 - - - -
- - 0.97 0.3 - 1.94 - - - - - - - - 3.17 -
- 3.97 - - - - - - - - - - - - -1.47 -
- - - - - - -3.31 2.62 2.65 1.79 - - - - - -
-7.39 - -6.62 -3.29 -3.68 -3.07 -0.83 0.51 1.36 1.71 2.28 1.54 - - -3.73 -4.83
- - 1.44 3.42 -1.43 -0.6 - - - 0.66 - - - - - -
- - - - - - - - - - - - - - - -
- - 2.99 - - - - - - 2.04 - 1.97 - - - -
- 0.05 2.03 2.6 1.03 1.12 - - - - -0.77 - - - - -
- - - - - - - -3.68 2.12 3.53 - - - - - -
2.61 2.53 - - - - - -0.28 0.73 - - 0.72 - - - -
- - 2.07 0.4 - 1.03 -0.6 - - - - - - - 2.96 -
- - 0.43 1.14 3.37 0.68 -1.76 -8.88 - - -4.44 -3.96 - -5.37 -3.3 -
3.99 - -5.93 -4.79 - -7.97 - - - - - - - - - -
- 4.0 - - - - - - - - - - - - - -
-2.68 -0.84 0.78 1.56 1.79 0.4 -3.14 -5.12 - - 1.28 1.55 -1.56 - - -
-6.04 -2.82 2.16 2.45 1.34 1.29 -3.03 -3.23 -3.22 -3.53 -1.92 -2.54 -8.49 -6.79 -4.94 -7.04
- -4.25 -3.75 -5.23 -0.33 -0.73 -7.23 3.28 0.46 1.57 -5.9 -2.42 - - -2.66 -
- -2.2 - -3.65 -1.15 3.89 -4.33 -2.59 - - - -2.25 - - - -
- - - 0.4 - 3.18 -3.2 -3.2 1.25 -1.87 -0.83 - - -0.13 0.36 -
- 1.38 - 1.7 - - - -0.71 - - - - - - 3.25 -
- - 1.17 1.61 0.43 1.8 2.38 -4.26 - -3.98 -1.95 -1.73 - - - -
- - - - 2.61 - 1.4 2.26 - - - - - 1.3 - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.