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Heatmap: Cluster_155 (Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
-6.05 -2.1 -2.26 -0.88 -3.32 - - -6.59 2.22 1.73 1.71 1.86 - - - -
-7.15 -6.32 -1.18 -0.97 0.1 -0.5 1.35 2.2 1.09 0.88 0.45 -0.37 - - - -
-0.1 -0.27 - - - - - 1.0 3.28 1.34 - - - - - -
- - -6.17 - -5.81 -1.6 -2.2 -2.23 1.27 0.48 3.06 1.58 - - -4.28 -
- - -0.72 0.43 1.01 1.74 1.56 -6.65 -6.01 -3.62 1.43 1.49 -4.66 -5.76 - -3.79
- 0.19 - - - 0.81 - - - - - - - - 3.71 -
3.23 0.93 -0.17 0.82 -1.33 -0.24 -3.01 - -2.48 -3.3 -2.39 -2.25 - - - -
- - 1.07 1.6 2.27 2.04 0.85 -8.38 - - -4.03 -4.14 - - - -
- - 1.02 -0.01 2.73 0.04 -0.59 -2.07 - - -2.85 0.51 - -0.11 0.97 -
-0.13 - -2.34 0.17 - -1.79 1.82 - - - 3.06 -0.19 - - -0.45 -
-8.3 3.99 -7.19 -5.27 - - -4.86 -7.26 -6.61 - -5.52 - - - -4.3 -
-3.67 - 0.8 0.78 2.36 -0.21 0.4 -3.19 - - 0.41 1.89 - -7.79 - -
- - 1.88 0.16 1.27 1.94 2.02 -3.26 - - -3.46 -1.75 - - -1.24 -
- 4.0 - - - - - - - - - - - - - -
-3.59 - - -4.52 -7.3 -5.15 -4.1 -0.62 3.07 2.69 -3.07 -2.97 - - - -
-4.2 -8.69 1.68 1.3 1.89 2.4 0.03 -6.83 - - -4.73 -2.47 - - -5.3 -
3.59 0.31 -1.86 -1.52 -1.74 0.43 - - - - -1.17 - - - - -
- - 2.29 1.92 2.07 1.32 -1.72 -5.8 -3.81 -6.33 -3.71 -2.82 - - - -
-2.7 -2.12 -1.6 -3.59 - -2.96 - -4.57 0.73 -2.3 3.02 2.19 - - -1.03 -
- -5.36 -2.8 -1.46 -2.93 -3.61 - 0.18 0.92 -0.58 1.24 3.19 - - -3.49 -
- - - - - - - - - - - - - - - -
- - 0.05 - 3.74 - - - - - - 0.68 - - - -
- - 1.5 1.62 2.21 0.25 0.83 -2.17 - - -0.62 -0.14 - - - -0.52
- - 0.53 0.86 -0.92 - - 0.55 - - - - - - 3.42 -
- -3.31 1.57 1.0 1.9 2.13 1.38 - - - - -2.23 - - - -
-2.43 -2.99 -3.44 - -3.31 -4.47 -5.11 1.16 2.33 2.36 -3.77 -3.87 -0.94 - 1.03 -1.65
- - - - - - - - - - 4.0 - - - - -
- 4.0 - - - - - - - - - - - - - -
- - 1.16 - - - - - - - - 0.72 - - 3.05 1.95
- - 1.87 2.05 1.41 1.53 - -3.08 -0.27 0.76 - -5.14 - - - -
- - 1.3 0.55 1.09 -0.72 2.7 -5.95 - - 0.58 0.09 - - -2.0 -
-5.42 -6.16 -0.07 -1.42 0.94 0.49 0.57 2.37 1.11 0.39 -4.0 -0.86 - - -0.77 -
3.03 1.23 -0.93 - - - -2.19 -0.21 - - - - - - 1.95 -
- - -1.78 -2.09 1.04 -0.31 2.88 0.42 -4.65 - 1.02 0.86 - - - -
- 3.62 -4.12 - -0.66 -2.15 1.44 - - - - -3.56 - - - -
- 0.37 -1.21 - -0.49 -2.25 -3.88 -2.27 -0.06 0.22 3.15 1.05 - - - -
- - -1.78 -2.45 1.95 -1.85 3.32 -4.95 - - -2.04 -3.54 - - 0.11 -
- - - - 0.93 1.43 1.39 2.05 - - -0.87 0.61 - - 1.36 -
- - - - - - - - - - - - - - - -
- 2.16 2.31 0.06 - 1.7 0.06 - - - - 0.3 - - - -
- - 1.97 2.87 1.59 -1.53 0.19 -5.61 - - - -3.7 - - -2.38 -
-9.25 - 1.58 2.13 1.07 1.7 -2.03 -4.94 -0.77 -1.55 0.43 -0.48 - - - -
-6.58 - 0.91 1.62 2.13 1.8 -0.83 -9.4 - - 0.55 0.12 -4.82 - - -
- - - 2.7 2.49 - - 1.96 - - - - - - - -
-1.97 3.72 - - -2.65 -0.24 -3.46 -1.34 - - - - - - 0.1 -
-4.61 - 1.92 2.25 1.87 1.56 -2.91 -5.33 -5.46 -4.92 -1.65 -1.89 - - - -
- - -0.38 - - - - -1.44 - - 0.28 1.18 - - 3.51 -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.