Heatmap: Cluster_124 (Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
- -1.33 - -6.02 - - -5.45 3.95 -4.17 -3.7 - - - - - -
4.0 - - - - - - - - - - - - - - -
2.43 -3.35 -0.35 -0.59 0.39 1.43 -0.65 0.4 -5.05 -6.73 0.5 0.7 - - - -
2.78 - - -3.58 - - - 3.01 - - - - -1.0 - -1.03 -
-4.66 3.89 -2.94 -0.82 -4.9 -1.64 -5.38 -6.88 - - - -5.47 - -6.21 - -
- 4.0 - - - - - - - - - - - - - -
- - 1.4 0.52 1.94 -0.83 -0.75 -2.34 -0.36 1.13 1.09 0.72 - - - -
1.41 - - - -0.47 - -2.27 0.14 -1.03 1.62 2.65 0.55 - - - -
-1.69 2.96 - - - - - - 0.94 2.58 - - - - - -
- - - - - - - - - - 3.45 2.34 - - - -
- 4.0 - - - - - - - - - - - - - -
0.56 2.28 0.06 - - - - - - - - - - -0.13 2.95 -
- -5.88 -2.89 -3.05 -2.32 -4.26 -1.08 3.88 -3.96 - -3.05 -3.16 - - - -
-6.23 - -0.72 -1.17 -0.8 -0.77 -1.26 -1.33 0.8 1.03 2.04 2.34 - - - -
- 1.7 -0.13 2.91 -1.01 1.16 -0.8 -1.81 - - -0.44 - - - - -
- - - - - - - - - - - - - - - -
1.37 -1.13 - -0.82 1.45 1.65 -3.49 -5.31 0.85 1.08 -2.05 1.16 - - - -
- -4.28 -0.01 0.35 0.06 -0.29 3.03 -2.39 - -4.04 1.3 -0.06 - - - -
-7.79 -7.54 0.38 0.99 2.06 1.86 2.12 -4.61 - - -2.16 -1.74 - - - -
- 4.0 -7.27 - - - - - - - - - - - - -
-1.19 - 1.22 1.17 1.04 -0.33 1.81 -0.28 0.05 0.07 -0.48 -0.0 - - - -
-12.25 - 2.45 1.6 0.06 2.11 -3.74 -5.37 -7.87 -6.64 0.03 -0.0 - - - -
-3.76 2.18 1.81 0.39 1.58 1.19 -0.81 -3.28 -2.36 - -2.27 - - -2.13 - -
-2.48 - 2.22 3.15 0.53 -0.61 -2.26 - - - - - - - - -
- - 2.11 1.72 0.24 2.19 1.3 -6.22 - - -3.2 -3.31 - - - -
- - -0.08 1.26 2.04 1.89 - - - - 0.6 - - 1.73 - -
- - 0.32 - 2.76 - 2.81 - - - - -0.07 - - - -
- - - 2.75 - - - - - - - - - 3.22 - -
- - -0.45 1.37 -0.64 3.59 - -5.42 - - - - - - - -
- - - - -2.51 - -2.32 3.97 - - - - - - - -
- - -2.22 -0.56 2.62 1.27 2.34 -4.87 - - - -1.07 - -2.4 -0.33 -
- - -3.48 -1.9 -2.53 -0.34 -4.4 2.07 2.63 2.04 -2.93 -5.62 - - - -
- -1.3 1.08 1.8 1.88 2.64 - -2.92 - - - - - - - -
- - - - - - - - - - - - - - - -
- - 2.04 2.37 - - - -0.62 - - - 2.6 - - - -
- - 1.95 3.2 - - 1.42 -4.52 - - -2.18 - - - - -
- 4.0 - - - - - -5.95 - - - -4.72 - - - -
- 0.66 - 1.56 - 3.52 - - - - - - - - - -
4.0 - - - - - - - - - - - - - - -
-4.56 3.99 - - -3.58 - - - - - - - - - - -
-3.27 2.87 -2.42 1.51 0.88 0.73 0.23 - - - -1.73 -0.83 - - - -
- - -0.86 0.22 3.56 -0.89 0.79 -2.2 - - - - - - - -
-6.75 - 2.71 2.52 0.52 1.16 -7.05 -7.57 - -7.34 -6.31 -6.6 - -7.56 - -
4.0 - - - - - - - - - - - - - - -
- - - - -6.26 - -5.65 -3.58 1.76 1.14 2.73 1.88 - - - -
- 0.16 - - -2.23 -0.39 1.75 0.19 - - 1.41 2.67 -1.44 - - -
-6.82 3.99 -6.03 -4.7 - - - -6.1 - - -5.36 - - -5.21 - -
- - - - - - - - - - - - - - - -
- - - - - - - - - - - - - - - -
- - -2.3 - -1.96 -4.92 3.9 -5.23 - - -1.63 -2.0 - - - -
- - - -2.82 -2.03 - 0.87 2.72 - - 0.53 2.43 - -1.35 - -
-2.14 - 2.45 2.28 1.63 0.25 -0.97 - - - -1.62 -1.72 - - - -
- - 1.48 1.48 1.85 2.6 -4.7 -5.18 -1.85 -4.7 -5.08 -1.52 - - - -
-1.39 3.97 - - - - - - - - - - - - - -
- - - - 4.0 - - - - - - - - - - -
- 3.04 - - - -0.11 2.49 - - - - -0.83 - -0.58 - -
- - 0.15 0.99 1.38 2.0 - -2.5 0.71 -2.03 1.91 -1.1 - - - -
- - 0.56 2.03 2.84 1.0 -2.13 -2.7 -3.21 -3.68 -1.42 -1.46 - - - -
4.0 - - - - - - - - - - - - - - -
3.08 - - - - - - -0.7 - - - - - 2.79 - -
3.84 - - -0.65 - - - - -1.42 -1.94 - - - -1.16 - -
- -5.91 -1.46 0.15 -4.44 -4.18 -2.87 0.18 1.14 1.72 2.0 1.86 - - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.