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Heatmap: Cluster_161 (Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
-0.45 0.4 -1.89 -1.18 -1.65 -1.6 1.14 0.9 -0.04 -0.35 -0.12 -0.55 0.3 0.38 0.22 0.54
-1.14 0.59 -3.96 -4.21 -3.34 -3.9 -1.33 1.92 1.59 1.37 -0.81 -1.01 -0.46 0.13 -0.59 -1.22
-2.46 -0.03 -0.08 0.42 -0.29 -0.08 1.18 0.64 1.15 1.12 -0.15 -1.09 -1.59 -1.64 -2.72 -1.34
0.52 0.41 -0.64 -0.17 -0.34 -1.21 0.94 0.05 -0.61 -0.53 0.99 0.82 -0.57 -0.67 -1.47 -0.38
1.72 -1.06 -1.77 -2.33 -0.77 -0.62 -0.09 -0.5 -0.68 -1.18 -0.09 -1.12 0.9 0.66 0.49 0.61
0.76 0.69 -0.7 -1.12 -0.65 -0.64 -0.17 -1.02 -0.65 -0.44 0.03 -0.01 0.32 0.65 0.64 0.26
0.48 -0.21 -1.19 -1.34 -1.06 -0.81 0.28 -0.6 0.12 0.04 0.46 0.34 0.25 0.5 0.62 0.13
-0.22 -1.84 -2.31 -2.48 -1.41 -1.13 0.44 -0.96 -2.18 -0.67 0.77 0.01 1.1 1.27 0.91 0.84
-0.15 0.45 -0.8 -1.08 -0.52 -0.22 0.44 -0.24 -1.18 -1.65 -0.94 -0.2 0.52 0.79 0.98 0.71
-0.44 -0.35 -1.9 -2.39 -1.72 -1.52 -1.18 -0.09 1.33 1.89 -1.08 -0.81 0.29 0.02 0.36 0.25
0.93 0.39 -1.9 -1.42 -1.32 -1.51 0.04 0.98 0.96 1.18 -0.47 -0.46 -0.69 -0.34 -0.37 -0.9
1.17 -0.82 -1.1 -1.18 -0.85 -0.15 -0.13 -0.31 0.71 -0.35 0.42 -0.03 -0.16 0.25 0.02 0.34
0.13 -0.35 1.87 1.51 1.31 0.15 -1.07 -1.67 -3.63 -3.97 -0.98 -1.28 -0.73 -0.91 -1.09 -0.85
0.04 -1.47 -0.51 -0.27 -0.27 -0.2 0.22 -0.46 -0.07 -0.19 0.02 0.03 0.62 0.43 0.3 0.59
0.41 0.39 0.43 -0.24 0.9 0.8 0.07 -1.12 -1.96 -1.86 -0.92 -0.45 0.02 -0.04 0.38 -0.04
-0.05 -1.56 -1.69 -1.28 -0.71 -0.45 0.36 -0.4 1.45 1.44 0.49 0.22 -0.43 -0.81 -1.08 -0.34
0.07 0.25 -3.17 -2.64 -1.57 -1.52 0.44 2.16 1.1 1.26 -1.9 -2.08 -1.02 -0.61 -1.68 -1.04
-0.28 0.57 -0.92 -1.12 -0.61 -0.17 0.52 -0.87 -1.93 -1.95 0.13 0.09 0.69 0.73 0.58 0.79
0.46 -3.87 -1.61 -2.89 -1.47 -1.82 -2.21 -0.92 -2.29 -3.23 -2.37 -1.12 1.57 1.7 1.21 1.68
1.72 -1.61 -1.61 -1.93 -0.79 -0.7 0.22 -0.05 -1.81 -2.03 -0.19 -0.45 0.78 0.71 0.56 0.57
0.05 -0.89 -2.21 -2.42 -1.93 -1.81 0.56 0.05 0.15 -0.34 0.55 -0.24 0.76 0.73 0.75 0.78
1.17 -0.13 -1.8 -2.45 -1.06 -0.78 -0.77 -0.09 -0.02 0.45 -0.52 -0.66 0.62 0.61 0.47 0.71
0.71 -1.09 -1.1 -0.96 -0.53 0.21 -0.22 -1.25 -0.99 0.15 0.73 0.26 0.41 0.41 0.04 0.7
0.37 0.91 -1.69 -1.22 -0.49 -0.39 0.03 0.11 0.82 1.18 0.79 0.36 -1.47 -1.24 -1.85 -1.28
-1.19 -1.92 -0.2 -2.16 -1.71 -2.47 2.32 2.49 -2.18 -2.27 -2.44 -2.96 -0.48 -0.59 -1.14 -0.89
-0.25 -0.45 -1.49 -2.01 -1.5 -0.86 0.38 -0.81 0.06 0.17 0.96 0.4 0.54 0.6 0.31 0.48
-1.48 -0.88 0.54 0.66 0.46 0.19 -0.28 -1.13 -0.29 -0.98 -1.21 -0.94 0.42 0.73 0.68 0.47
-0.34 -2.42 0.23 0.36 0.92 0.33 0.28 -1.31 -0.71 -0.62 0.46 -0.24 0.14 0.13 0.01 0.18
0.91 0.34 - - -6.16 -3.14 0.58 0.38 - - - - 1.58 1.65 0.92 0.93
-2.1 -0.88 -1.36 -1.51 -1.05 -0.72 -0.31 1.93 1.49 1.93 -1.11 -1.03 -1.68 -1.7 -2.04 -1.59
-0.04 2.08 -1.47 -2.03 -0.87 -1.05 0.86 0.03 -2.11 -2.94 0.0 -0.09 -0.24 -0.02 0.12 0.15
-0.09 -0.15 -0.71 -0.44 -0.76 -0.3 0.74 -0.14 0.2 0.1 0.64 0.54 -0.05 -0.24 -0.24 -0.1
0.88 -1.32 -0.7 -1.09 0.08 -0.43 0.55 -0.98 -5.52 -7.78 -1.62 -0.85 0.82 1.01 1.08 1.08
0.26 1.56 -1.19 -1.66 -0.65 -0.49 -0.33 -0.75 -0.57 -0.85 -0.69 -0.37 0.53 0.41 0.74 0.38
0.75 -0.89 -0.16 -1.14 -0.13 0.25 -0.12 -0.98 -1.14 -0.89 0.21 -0.31 0.37 0.76 0.72 0.39
0.18 -0.68 -1.16 -1.54 -0.56 -0.13 0.64 -0.19 0.04 -0.06 0.38 -0.2 0.56 0.44 0.13 0.43
-2.13 -2.53 -0.29 -0.61 -0.35 -0.69 1.52 -2.32 -2.1 -1.08 0.77 0.44 0.56 0.44 0.65 0.57
0.45 -0.71 -0.91 -0.97 -0.3 -0.38 0.68 0.04 -0.03 -0.51 0.48 0.3 0.28 0.07 0.21 0.07
-1.25 -0.86 -2.43 -2.74 -2.07 -1.47 -2.83 1.32 2.03 2.17 -2.17 -2.48 -0.59 -0.71 -0.98 -0.58
-2.38 -0.08 0.84 1.35 -0.06 -0.04 0.85 0.02 0.96 -0.14 0.7 -0.28 -3.16 -3.02 -3.51 -2.78
0.87 1.13 -2.45 -2.37 -2.05 -1.61 0.1 0.19 0.75 0.44 -0.68 -0.51 0.27 0.14 0.06 0.15
0.71 -1.28 -0.86 -0.45 -0.93 -0.45 0.86 -0.24 -1.06 -2.27 0.49 0.39 0.78 0.48 -0.06 0.36
-0.73 -0.87 -0.62 -0.93 -0.51 0.04 0.85 -0.28 -0.08 -0.32 0.85 0.68 0.02 0.1 0.24 -0.15
1.1 0.54 -0.47 -1.56 -0.12 -0.17 0.23 -0.04 -1.11 -1.68 -0.84 -0.8 0.66 0.57 0.31 0.23
0.01 0.38 -1.15 -1.2 -1.2 -0.55 -0.07 -0.67 0.21 -0.05 0.23 -0.3 0.32 0.41 0.87 0.66
0.44 -0.86 -2.54 -2.52 -2.14 -1.5 -0.43 0.19 1.76 1.83 -0.42 -1.19 -0.3 -0.31 -0.31 -0.5
-0.74 -4.27 - - - -7.37 -8.02 -6.7 - - - - 1.83 1.84 2.28 1.75
1.17 -0.3 -0.93 -1.63 -0.83 -0.66 0.24 -0.78 -0.77 -0.42 -0.26 -0.23 0.7 0.75 0.44 0.53
0.29 -1.39 1.84 1.92 0.81 0.65 -3.99 -3.21 -1.78 -2.21 -5.47 -4.99 0.06 -0.77 -1.43 -0.05
0.08 -0.3 -1.79 -1.42 -1.41 -0.52 -0.13 1.36 1.13 1.33 -0.65 -0.82 -0.31 -0.5 -0.26 -0.58
-0.81 -1.48 1.56 1.78 1.86 1.4 -1.03 -2.39 -3.92 -4.06 -1.89 -1.94 -1.83 -1.81 -2.21 -1.73
-0.25 -1.24 0.18 0.36 0.46 1.22 0.16 -0.57 -1.22 -1.03 0.38 -0.27 0.13 0.05 -0.21 -0.35
0.55 -0.4 -1.3 -1.35 -1.07 -0.46 0.68 -0.17 0.43 0.53 0.55 -0.24 0.13 0.03 -0.11 0.2
-0.27 -0.94 -1.34 -0.97 -0.64 0.07 0.06 -1.25 -1.29 -0.12 0.41 -0.41 0.8 0.9 0.88 0.8
-0.74 -0.77 0.56 0.65 0.66 0.08 0.15 -0.61 -0.36 -1.19 0.24 0.67 0.01 -0.38 -0.48 -0.17
-0.47 -0.07 -3.65 -4.18 -4.09 -3.43 0.71 -0.02 -3.17 -2.35 -1.09 -2.22 1.44 1.32 0.92 1.73
0.26 -0.96 0.26 0.3 0.05 -0.34 0.19 -0.33 -0.23 -0.23 0.12 -0.84 0.32 0.36 0.11 0.18
0.92 0.2 -1.79 -1.93 -1.46 -0.65 0.42 -0.59 0.25 0.13 0.77 -0.28 0.49 -0.13 -0.16 0.47
1.01 -0.72 -1.32 -2.48 -0.94 -0.89 -0.07 -1.49 -2.34 -1.63 -0.76 -1.22 1.19 1.07 1.08 1.26
1.18 1.09 -1.9 -2.12 -0.99 -0.92 -0.72 -0.61 0.6 0.45 -0.17 -0.55 0.28 0.09 -0.14 0.24
0.04 -1.11 -2.6 -2.34 -2.31 -0.84 0.24 0.13 -0.15 -0.11 0.27 -0.13 1.07 0.77 0.37 1.05
0.23 -1.25 -1.12 -0.94 -0.65 -0.54 0.29 -0.15 -0.16 -0.26 0.1 -0.54 0.89 0.7 0.51 0.65
-1.0 -2.68 0.13 0.23 0.16 0.44 -0.34 -1.79 0.12 1.01 1.45 1.16 -0.94 -1.91 -2.22 -1.16
1.26 -0.1 -0.29 -1.06 -0.26 -0.03 0.23 -1.22 -1.95 -1.19 -0.56 -0.25 0.5 0.5 0.52 0.56
- -5.99 -0.63 -0.97 -2.05 -2.24 0.95 0.5 - - - - 1.51 1.37 1.43 1.54
0.02 -0.79 -1.76 -1.91 -2.17 -2.56 0.77 0.06 -0.64 -0.94 -0.25 0.06 0.9 1.05 1.09 0.68
-0.38 -1.48 -0.89 -0.72 -0.99 -0.17 0.38 0.02 -0.53 -0.87 -0.43 -0.59 1.15 0.96 0.91 0.43
- -8.11 -3.02 -3.48 -7.3 -5.11 -1.24 0.47 -2.89 -4.42 -4.11 -4.22 1.49 1.76 1.53 2.19
-0.88 -0.21 -1.9 -1.68 -0.33 -0.42 0.1 0.25 1.29 1.44 0.7 0.41 -0.57 -0.92 -2.0 -0.63
0.3 -2.08 -0.98 -1.21 -0.45 0.72 0.18 -0.09 -0.13 -0.26 0.79 0.05 0.31 0.22 0.08 0.22
-4.65 -1.54 -5.18 -7.06 -4.63 -4.48 0.3 -0.52 -2.32 -3.46 -4.57 -6.8 1.89 1.7 1.89 1.36
-0.1 - - - -0.75 -1.81 0.62 0.09 1.85 1.16 0.53 -0.49 0.21 -0.3 -2.17 0.47
0.86 0.04 -1.99 -2.3 -4.3 -1.98 1.14 -0.37 -1.65 -2.14 -1.67 -2.37 1.39 1.07 1.2 0.42
2.18 -0.48 -2.49 -3.44 -1.97 -0.57 0.12 -1.04 -4.56 -5.14 -1.64 -1.47 1.02 1.15 0.49 0.65
1.29 -0.94 -1.17 -1.43 -1.11 -0.96 0.29 -0.25 -0.56 -0.44 0.23 -0.01 0.58 0.38 0.47 0.51
0.12 -0.03 -1.23 -1.05 -0.79 -0.58 0.59 -0.55 0.1 -0.06 0.67 0.75 0.17 0.12 0.07 0.04
0.71 -0.85 -0.79 -1.21 -0.55 -0.31 0.29 -0.88 -0.57 -0.53 0.25 -0.46 0.9 0.79 0.54 0.28
1.24 -0.1 -0.81 -0.71 -0.52 -0.26 0.31 -1.21 -0.52 -0.24 0.89 0.62 -0.17 -0.36 -0.32 -0.12
-0.16 -0.65 -1.25 -1.02 -1.19 -1.01 -0.43 -0.65 1.24 0.59 0.2 0.06 0.4 0.56 -0.26 0.64
0.41 -0.7 -1.05 -1.15 -0.55 -0.59 0.66 -0.24 0.02 0.06 0.57 -0.55 0.47 0.4 0.21 0.35
1.34 1.23 -1.55 -1.77 -1.19 -0.75 0.35 -0.78 -0.32 -0.63 0.11 0.36 -0.08 -0.03 -0.19 -0.02
0.59 -0.22 -1.11 -1.3 -1.32 -0.9 0.22 -0.39 -1.2 -1.46 -0.34 -0.25 0.74 0.94 1.0 0.9
-1.76 -7.78 -0.17 -0.36 -0.46 -0.28 0.68 0.01 -2.55 -1.2 0.75 0.47 0.73 0.75 0.6 0.44
0.57 0.26 -0.85 -1.2 -0.91 -0.84 -0.48 -1.1 -0.8 -1.09 -1.26 -0.97 0.94 1.04 1.18 0.89
-1.67 -1.36 0.86 1.41 1.08 0.99 0.12 -0.17 -1.02 -1.17 0.97 0.42 -3.08 -2.81 -3.22 -2.91
-0.3 0.16 -0.43 -0.27 -0.11 -0.19 0.8 0.0 0.89 0.58 0.68 0.44 -1.26 -1.2 -1.23 -1.45
0.94 0.45 -0.7 -0.53 -0.38 -0.1 0.56 -0.0 -0.66 -0.88 -0.52 -0.18 0.07 0.38 0.01 0.15
0.07 -1.0 -1.61 -1.54 -1.25 -0.52 0.7 -0.21 -0.02 0.36 0.73 -0.23 0.18 0.51 0.5 0.5
0.35 -0.2 -1.23 -1.44 -1.05 -0.72 -1.42 -1.15 0.85 0.68 1.54 1.41 -0.97 -0.98 -0.38 -1.36
-0.11 -0.12 -0.65 -0.36 -0.05 -0.12 0.6 -0.93 -0.09 0.29 1.09 0.76 -0.18 -0.43 -0.86 -0.6
-0.24 -0.15 -0.02 0.33 0.09 0.2 0.56 -0.28 0.07 0.46 0.84 0.57 -1.13 -1.3 -1.04 -1.17
-0.83 -2.66 0.49 1.14 0.22 0.92 -0.21 -0.92 -0.88 0.24 0.85 0.86 -1.11 -0.96 -1.32 -0.99
0.01 -1.12 0.35 0.74 0.91 1.21 -0.01 -0.41 0.05 -0.09 0.12 -0.52 -0.91 -1.47 -0.94 -1.11
0.2 -1.48 0.43 0.45 0.8 0.63 -1.03 -1.27 -1.24 -0.83 0.15 -0.16 0.38 0.13 0.36 -0.11
0.89 -0.38 -0.98 -1.32 -1.15 -0.53 0.62 -0.33 -0.25 -0.67 -0.1 -1.04 0.6 0.67 0.77 0.39
0.49 0.63 0.61 0.75 -0.23 -0.13 0.95 -0.01 - - - -7.41 0.65 0.21 -0.55 0.78
1.39 -0.12 -1.51 -1.94 -0.48 -0.5 -0.44 -0.19 0.11 -0.07 -0.79 -1.34 0.57 0.55 0.55 0.48
0.71 0.09 -3.36 -3.06 -3.55 -3.1 0.54 -0.49 0.0 -0.7 0.23 -0.24 0.83 1.1 0.48 0.82
0.4 -0.36 -1.47 -1.87 -1.4 -1.47 0.76 0.06 0.15 -0.57 0.3 -1.31 0.49 0.65 0.94 0.57
0.64 -0.27 -1.04 -0.89 -1.18 -1.18 0.08 -0.56 0.03 0.07 0.25 0.33 0.56 0.28 0.4 0.54
-0.43 -0.34 -1.87 -1.87 -1.37 -0.42 0.36 0.52 0.8 0.77 0.12 0.05 0.5 0.55 -0.08 -0.57
0.25 0.09 -0.55 -1.15 -0.47 0.29 -0.16 -0.87 -0.37 -0.78 -0.96 -0.63 0.49 0.53 1.24 0.57

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.