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Heatmap: Cluster_5 (Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
-4.86 3.87 -5.99 -5.65 -0.58 -3.43 -1.08 - - - - - - -5.18 - -
- - - 2.89 - - - 2.07 2.13 - - - - - - -
-5.06 3.85 - - -2.49 -3.23 -2.88 - - - - - - -1.81 -0.32 -
-0.39 - 1.02 1.5 0.9 2.2 -0.66 - - - 0.72 -0.13 - - -0.43 -
- -7.49 -3.57 -3.51 -6.89 -6.52 -1.62 1.48 2.62 2.51 -1.12 -1.45 - - - -
-5.31 -4.02 -1.99 -2.42 -0.88 -1.29 -8.0 - -2.6 -3.97 2.91 2.75 -6.38 -7.3 - -5.78
- - 1.03 2.67 0.55 2.17 - -2.86 - - -1.41 -0.52 - -1.34 - -
- - - - - - - - - - - - - - 4.0 -
- - 0.96 0.55 0.61 0.8 2.71 -0.98 -3.6 - -1.51 0.39 - -3.35 -1.28 -
-1.22 2.86 -1.94 -3.46 -2.39 -2.74 -0.49 -0.75 1.29 0.13 0.66 0.05 -3.78 - -3.81 -5.91
- - 2.67 - - - - - 3.27 - - - - - - -
-7.94 - 0.74 1.21 2.13 1.34 2.28 -5.12 - - -5.1 -4.62 -6.84 -7.94 -3.28 -4.38
- - - - - - - 1.38 - - - - - - 3.74 -
- - - - - - - - - - - - - 4.0 - -
- - - - - - - - - - - - - - - -
2.5 -3.54 -0.06 0.23 1.7 0.38 0.4 -2.64 -5.56 -6.5 -0.88 0.5 -5.24 -5.33 -5.26 -5.36
-5.32 -1.45 -7.67 -7.33 -8.54 -7.7 -4.95 -0.28 2.79 2.92 -3.23 -3.7 -6.76 -5.85 -5.78 -
-7.18 - -0.53 -0.85 -2.59 -1.53 -0.28 2.19 -0.91 -0.05 2.15 1.26 -3.51 -3.43 -1.53 -
- - 3.05 0.7 -0.54 1.33 -0.33 - - - - -0.04 - 0.15 - -
-2.42 - 0.69 2.5 -1.5 -1.67 - -2.29 -1.07 - - - 1.28 - 2.25 -
- - - 0.77 - - - 2.31 2.85 1.09 - - - - - -
-11.36 - 1.81 2.1 2.18 1.45 -1.53 -6.3 -3.72 -1.94 -3.47 -2.94 -9.67 -9.18 -5.37 -7.79
-8.55 -5.72 -2.31 -2.54 -2.46 0.82 -4.89 -2.98 3.41 -0.55 0.55 -0.44 -9.49 -10.58 -7.51 -
-3.54 - 1.35 1.46 2.51 1.26 0.91 -4.13 - - -2.81 -2.92 - -3.25 -2.18 -
- 0.55 -1.15 -0.82 -1.6 1.63 - -2.19 -2.17 -2.11 -2.08 - 0.18 1.28 2.49 -
-4.97 0.46 -1.47 -0.98 0.23 -1.3 0.96 -1.59 -0.2 0.69 2.03 1.36 -4.6 -5.7 -1.04 -2.41
-6.02 -1.34 1.76 1.73 1.37 2.02 -4.61 -2.74 -1.53 -0.68 -0.99 -1.02 -7.6 -4.52 -4.46 -7.93
0.35 - - 1.5 1.29 1.13 - - - - - 1.73 - 1.98 - -
-0.03 -2.77 0.34 0.4 -0.12 1.3 -1.34 0.39 0.32 0.71 - - 1.25 -1.42 0.66 -
1.69 3.63 -1.22 - - - - - - - - - - - - -
-5.17 1.3 0.7 1.05 1.84 2.37 -1.54 -5.19 -7.53 - -2.08 -2.5 -6.18 -4.96 -2.21 -
- - -1.37 - -2.83 - -2.04 -0.3 3.61 -0.71 - - - -0.56 -0.07 -
-6.14 - 1.46 1.73 1.86 2.36 -4.02 -5.85 -5.7 -4.76 -0.76 -1.42 - -8.16 -5.09 -
- 4.0 - - - - - - - - - - - - - -
-2.96 3.92 - -1.72 - - - - - - - - - -1.25 - -
-4.53 -1.84 1.66 2.31 2.34 0.3 -0.98 -2.36 -6.16 -6.1 -3.07 -1.81 -5.82 -6.92 -4.85 -3.94
- - - - - - - - - - - - - - 4.0 -
- 3.84 - - - -1.1 - - - - - - - - 0.23 -
- - - - - - - - - - - - - 4.0 - -
- 0.86 - - - - -0.16 -0.59 - - - 1.1 - - 3.39 -
- - 0.57 1.49 0.11 2.13 - -4.68 1.39 - -1.33 - -0.1 -1.2 0.87 -
-4.61 - 2.26 1.2 1.97 1.01 0.93 -7.02 - - -4.66 -0.31 - - -2.47 -
- - 1.57 1.54 0.04 2.18 2.07 -4.66 - - -3.44 -2.13 - - - -
-1.19 -0.43 0.53 0.99 1.64 0.23 0.37 1.43 -0.49 0.01 -0.91 -0.66 -5.84 -4.62 -2.55 -
- - - - - - 0.8 -1.23 - - 0.19 - 2.37 1.28 2.35 -
- - 0.29 0.63 2.57 0.63 -4.83 -11.35 -3.23 -4.5 1.22 1.69 - -8.46 -5.8 -
-3.32 -3.06 -0.86 -0.91 0.03 0.61 -0.23 2.65 -4.01 -3.94 0.55 0.99 -1.65 -3.74 -0.09 -2.77
0.87 - - - - - - - - - - - - 3.83 - -
- - - - - - - - - - - - - - - -
-3.8 - 1.68 0.89 1.37 2.79 -2.64 -6.63 -2.38 - -3.29 -2.39 -2.06 - -1.08 -
- 3.23 - - - - - - - - - - - - 2.73 -
0.87 3.82 - - - - - - - - - - - - - -
-4.27 -0.17 -0.72 -0.23 0.05 1.65 0.26 2.66 - -4.84 -1.8 0.34 - - -1.59 -
2.86 - - - - - - 3.13 - - - - - - - -
- 3.99 - -4.81 -5.75 - - - -6.89 - - - - -6.65 - -
- 2.46 - - - -0.49 - -3.19 1.73 - 0.24 - - - 2.37 -
-3.17 -2.82 1.15 1.32 1.56 2.2 -0.51 -2.07 -2.76 -3.56 -0.53 -0.84 -2.85 -2.34 -0.67 -2.92
- - 1.48 0.81 - 1.45 2.13 2.13 - - - - - - - -
-1.22 -3.39 1.45 0.67 1.31 1.93 -4.14 -2.07 0.07 -0.44 0.28 0.19 -6.08 -2.72 -2.3 -4.21
- - 0.73 0.6 0.73 0.56 2.75 -3.96 - - -2.65 -1.17 - -1.17 0.9 -
- - - - - - - - - - - - - - - -
- - - - - - - - 0.99 3.05 0.08 -0.02 1.33 0.24 - -
-8.02 - 1.72 1.89 1.55 0.89 -2.4 -3.06 -0.62 -0.5 0.29 0.35 - -6.48 -4.76 -
0.26 - - 0.36 0.17 - - - - - 0.69 0.59 1.95 2.44 - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.