Heatmap: Cluster_667 (Zea mays HCCA coexpression clusters - Leiboff and Hake (2019))

View as: (view zlog-transformed or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Showing raw values)

Transpose table Download table

Gene	lower leaf, severe C. zeina infection (Swart et al., 2017)	lower leaf, moderate C. zeina infection (Welgemoed et al., 2020)	CO192 (Hirsch et al., 2014)	B114 (Hirsch et al., 2014)	gt1 mutant 12 days after planting (Dong et al., 2019)	INBRED_305 (Hirsch et al., 2014)	CG106 (Hirsch et al., 2014)	H14 (Hirsch et al., 2014)	12 days post infection, U. maydis (Ludwig et al., 2021)	TSSM-infested 2hr (Bui et al., 2018)	fea4 mutant (Pautler et al., 2015)	PHZ51 (Hirsch et al., 2014)	A374 (Hirsch et al., 2014)	C123 (Hirsch et al., 2014)	H124w (Hirsch et al., 2014)	C49A (Hirsch et al., 2014)	HillA overexpressed, exposed to D. maidis (Pecher et al., 2019)	H105W at V1 stage (Mazaheri et al., 2019)	CI64 (Hirsch et al., 2014)	NC250 (Hirsch et al., 2014)	F7 (Hirsch et al., 2014)	CI90C (Hirsch et al., 2014)	AR228 (Hirsch et al., 2014)	upper leaf, minimal C. zeina infection (Swart et al., 2017)	DKWDAD1 at V1 stage (Mazaheri et al., 2019)	F115 (Hirsch et al., 2014)	A632 (Hirsch et al., 2014)	wild type 15 days after planting (Zuo et al., 2019)	12 hours post infection, U. maydis (Ludwig et al., 2021)	Mo17, 5-day-old (Regulski et al., 2013)	N control (Ravazzolo et al., 2021)	B46 at V1 stage (Mazaheri et al., 2019)	LH169Ht at V1 stage (Mazaheri et al., 2019)	DK3IJI1 at V1 stage (Mazaheri et al., 2019)	N plus TIS108 (Ravazzolo et al., 2021)	ND259 at V1 stage (Mazaheri et al., 2019)	no water, stage 1 (Pankievicz et al., 2022)	PHGV6 at V1 stage (Mazaheri et al., 2019)	DK6F545 at V1 stage (Mazaheri et al., 2019)	W10001_0040 at V1 stage (Mazaheri et al., 2019)	W10001_0012 at V1 stage (Mazaheri et al., 2019)	W10006_0011 at V1 stage (Mazaheri et al., 2019)	BSSSC0_054 at V1 stage (Mazaheri et al., 2019)	DE2 at V1 stage (Mazaheri et al., 2019)	LH175 at V1 stage (Mazaheri et al., 2019)	PHK29 at V1 stage (Mazaheri et al., 2019)	smk7a, kernel 20 days after polination (Wang et al., 2023)	PHR63 at V1 stage (Mazaheri et al., 2019)	W10006_0012 at V1 stage (Mazaheri et al., 2019)	ICI 581 at V1 stage (Mazaheri et al., 2019)	PHR55 at V1 stage (Mazaheri et al., 2019)	B73, silk 0 day after planting (Zhou et al., 2019)	PHKE6 at V1 stage (Mazaheri et al., 2019)	MS71 at V1 stage (Mazaheri et al., 2019)	Va17 at V1 stage (Mazaheri et al., 2019)	12 days post infection, Mock (Ludwig et al., 2021)	SAP11mbsp overexpressed,exposed to M. quadrilineatus (Pecher et al., 2019)	DK78004 at V1 stage (Mazaheri et al., 2019)	+NO3 (Ravazzolo et al., 2021)	B73 at V1 stage (Mazaheri et al., 2019)	W7151 at V1 stage (Mazaheri et al., 2019)	W10006_0009 at V1 stage (Mazaheri et al., 2019)	Tr9-1-1-6 at V1 stage (Mazaheri et al., 2019)	B73xMo17, 0 days after planting (Zhou et al., 2019)	Mo17, 0 days after planting (Zhou et al., 2019)	B73, 5-day-old (Regulski et al., 2013)	wildtype coleoptile tips (Liu et al., 2021)	Immature embryo 23 days after planting (Juárez-gonzález et al., 2019)	Mo17, 27 days after planting (Zhou et al., 2019)	NIL1_F271_E (Cuello et al., 2019)	B73, v12 (Zhou et al., 2019)	NIL2_F271_I (Cuello et al., 2019)	days after sowing 4 R (Fagny et al., 2021)	B73, radicle (Zhou et al., 2019)	B73xMo17, auricle v12 (Zhou et al., 2019)	B73xMo17, v14 (Zhou et al., 2019)	Mo17xB73 14 days after planting (Zhou et al., 2019)	B73xMo17, 0 day after planting (Zhou et al., 2019)	Mo17 14 days after planting (Zhou et al., 2019)	B73, coleoptile tip (Zhou et al., 2019)	B73, 0 day after planting (Zhou et al., 2019)	B73, seedling meristem 11 days after sowing (Zhou et al., 2019)	Mo17xB73 27 days after planting (Zhou et al., 2019)	Section 02 (Wang et al., 2014)	Section 04 (Wang et al., 2014)	Section 06 (Wang et al., 2014)	Section 08 (Wang et al., 2014)	Section 09 (Wang et al., 2014)	Section 10 (Wang et al., 2014)	Section 01 (Wang et al., 2014)	Section 03 (Wang et al., 2014)	Section 07 (Wang et al., 2014)	Section 11 (Wang et al., 2014)	Section 12 (Wang et al., 2014)	Section 13 (Wang et al., 2014)	Section 14 (Wang et al., 2014)	Section 15 (Wang et al., 2014)	Section 16 (Wang et al., 2014)	Dev Stage 5 (Leiboff et al., 2019)	Dev Stage 4 (Leiboff et al., 2019)	Dev Stage 1 (Leiboff et al., 2019)	Dev Stage 3 (Leiboff et al., 2019)	Dev Stage 2 (Leiboff et al., 2019)
Zm00001d007301_T001	25.11	32.59	39.37	47.46	87.41	30.36	48.98	46.23	14.48	1.09	38.37	42.59	38.94	44.54	21.7	57.44	9.77	74.87	36.77	38.22	46.43	39.58	45.14	6.25	79.51	47.71	44.75	26.83	25.38	122.82	109.55	55.18	42.46	77.75	119.61	57.59	82.04	47.48	66.78	37.05	30.57	36.79	72.68	55.85	39.98	45.59	11.98	57.5	58.38	71.07	47.97	9.45	40.81	52.78	56.12	2.66	28.8	73.28	124.05	63.22	53.07	40.17	50.41	103.77	87.86	132.58	101.04	79.59	37.74	21.91	7.08	13.51	79.94	116.59	22.66	47.26	28.54	27.13	40.79	129.11	33.96	118.13	2.12	20.39	1.1	1.5	0.0	0.0	0.95	8.34	7.46	0.0	0.47	0.0	0.14	1.2	0.18	37.82	30.16	30.18	33.44	30.03	28.58
Zm00001d008290_T001	0.17	0.09	0.0	0.0	0.75	0.0	0.0	0.0	0.15	0.04	0.59	0.0	0.14	0.36	0.0	0.27	0.16	0.0	0.0	0.17	0.0	0.0	0.1	0.0	0.09	0.0	0.0	0.07	0.06	0.0	0.21	0.0	0.05	0.12	0.21	0.12	0.0	0.09	0.0	0.04	0.05	0.0	0.0	0.0	0.25	0.19	0.08	0.09	0.14	0.0	0.0	0.23	0.0	0.0	0.2	0.03	0.09	0.19	0.0	0.0	0.0	0.08	0.09	0.26	0.47	0.1	0.05	0.32	0.25	0.06	0.35	0.07	0.48	0.0	0.41	0.1	0.12	0.0	0.0	0.08	0.15	0.0	0.03	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.18	0.12	0.55	0.18	0.0
Zm00001d037513_T001	24.28	13.44	1247.77	604.37	29.46	950.85	1436.09	843.51	81.52	17.93	1.78	1104.85	1215.07	1211.39	1248.11	777.06	1918.47	725.79	1160.71	1130.71	1265.76	738.72	769.67	94.88	646.36	598.0	1267.13	0.0	3015.0	153.75	0.79	404.78	643.81	256.48	0.15	292.26	0.0	383.7	547.83	969.86	666.11	581.96	381.04	349.98	739.22	383.24	0.0	604.66	331.22	840.39	568.64	0.0	814.96	375.2	495.5	583.42	1091.88	306.27	0.53	1363.61	557.63	623.45	1288.4	76.48	32.46	150.73	6.16	0.77	0.38	0.52	0.0	0.2	0.89	0.0	23.71	7.48	0.0	0.24	0.0	175.85	0.0	358.42	0.0	4174.61	4079.11	3794.22	1591.93	694.06	1005.14	675.1	4259.5	1523.46	718.46	526.67	320.63	334.8	221.98	3199.79	3.0	6.14	10.8	4.04	4.7

Details

Raw expression values (TPM normalized), Green cells indicate low expression and red high. (Dark gray cells indicate missing values)