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  5. Sevir.3G081500.1

Sevir.3G081500.1


Description : EF hand calcium-binding protein family


Gene families : OG_01_0011634 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0011634_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.3G081500.1 No neighbors in network
Neighborhood Setaria viridis coexpression network - Anderson et al (2021): Sevir.3G081500.1
Cluster Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_13


Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002048 EF_hand_dom ProSiteProfiles 118 153
IPR011992 EF-hand-dom_pair SUPERFAMILY 4 147
IPR018247 EF_Hand_1_Ca_BS ProSitePatterns 50 62
IPR018247 EF_Hand_1_Ca_BS ProSitePatterns 95 107
IPR002048 EF_hand_dom CDD 86 147
IPR018247 EF_Hand_1_Ca_BS ProSitePatterns 14 26
IPR018247 EF_Hand_1_Ca_BS ProSitePatterns 131 143
IPR002048 EF_hand_dom Pfam 7 65
IPR002048 EF_hand_dom Pfam 85 147
IPR002048 EF_hand_dom ProSiteProfiles 1 36
IPR002048 EF_hand_dom CDD 5 66
IPR002048 EF_hand_dom SMART 122 150
IPR002048 EF_hand_dom SMART 86 114
IPR002048 EF_hand_dom SMART 5 33
IPR002048 EF_hand_dom SMART 41 69
IPR002048 EF_hand_dom ProSiteProfiles 37 72
IPR002048 EF_hand_dom ProSiteProfiles 82 117

No CAZYmes available for this sequence

No external refs found!