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  5. Sevir.3G085400.1

Sevir.3G085400.1


Description : Protein with RING/U-box and TRAF-like domains


Gene families : OG_01_0000708 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000708_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.3G085400.1
Neighborhood Setaria viridis coexpression network - Anderson et al (2021): Sevir.3G085400.1
Cluster Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_127
Cluster Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_108


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
CC GO:0005737 cytoplasm ISM GOs from InterProScan
BP GO:0006511 ubiquitin-dependent protein catabolic process ISM GOs from InterProScan
BP GO:0007275 multicellular organism development ISM GOs from InterProScan
MF GO:0008270 zinc ion binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR008974 TRAF-like Gene3D 196 329
IPR013010 Znf_SIAH ProSiteProfiles 141 201
IPR018121 7-in-absentia-prot_TRAF-dom Pfam 130 329
IPR001841 Znf_RING ProSiteProfiles 88 124
IPR013083 Znf_RING/FYVE/PHD Gene3D 82 130
IPR013083 Znf_RING/FYVE/PHD Gene3D 136 195

No CAZYmes available for this sequence

No external refs found!