Sevir.3G086800.1

Description : rhamnose biosynthesis 1

Gene families : OG_01_0001128 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0001128_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.3G086800.1
Neighborhood	Setaria viridis coexpression network - Anderson et al (2021): Sevir.3G086800.1
Cluster	Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_83
Cluster	Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_18

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008460	dTDP-glucose 4,6-dehydratase activity	ISM	GOs from InterProScan
BP	GO:0009225	nucleotide-sugar metabolic process	ISM	GOs from InterProScan
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016829	lyase activity	None	Extended
MF	GO:0016835	carbon-oxygen lyase activity	None	Extended
MF	GO:0016836	hydro-lyase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0055086	nucleobase-containing small molecule metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901135	carbohydrate derivative metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR029903	RmlD-like-bd	Pfam	380	552
IPR036291	NAD(P)-bd_dom_sf	SUPERFAMILY	378	653
IPR016040	NAD(P)-bd_dom	Pfam	11	316
IPR005888	dTDP_Gluc_deHydtase	CDD	8	323
IPR036291	NAD(P)-bd_dom_sf	SUPERFAMILY	4	331

No CAZYmes available for this sequence

External Links

No external refs found!