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  5. Sevir.3G087500.1

Sevir.3G087500.1


Description : 5\'-3\' exonuclease family protein


Gene families : OG_01_0014440 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0014440_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.3G087500.1
Cluster Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_83


Type GO Term Name Evidence Source
MF GO:0003677 DNA binding ISM GOs from InterProScan
MF GO:0003824 catalytic activity ISM GOs from InterProScan
MF GO:0004518 nuclease activity ISM GOs from InterProScan
MF GO:0016788 hydrolase activity, acting on ester bonds ISM GOs from InterProScan
MF GO:0046872 metal ion binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR006084 XPG/Rad2 PANTHER 1 547
IPR029060 PIN-like_dom_sf SUPERFAMILY 2 235
IPR036279 5-3_exonuclease_C_sf SUPERFAMILY 221 358
IPR008918 HhH2 SMART 222 255
IPR019974 XPG_CS ProSitePatterns 144 158
IPR006086 XPG-I_dom SMART 141 213
IPR006085 XPG_DNA_repair_N SMART 1 102
IPR006086 XPG-I_dom Pfam 144 235
IPR044752 PIN-like_EXO1 CDD 1 206
IPR006085 XPG_DNA_repair_N Pfam 1 100
IPR006084 XPG/Rad2 PRINTS 24 38
IPR006084 XPG/Rad2 PRINTS 140 157
IPR006084 XPG/Rad2 PRINTS 225 240
IPR006084 XPG/Rad2 PRINTS 76 95

No CAZYmes available for this sequence

No external refs found!