- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : Pentatricopeptide repeat (PPR-like) superfamily protein
Gene families : OG_01_0005657 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0005657_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Brachypodium distachyon coexpression network - v0.2 (X-meeting 2023): Bradi4g36740.2 | |
| Cluster | Brachypodium distachyon HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_108 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 219 | 253 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 114 | 148 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 40 | 72 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 221 | 255 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 361 | 388 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 117 | 148 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 152 | 181 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 392 | 414 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 81 | 115 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 292 | 324 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 46 | 78 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 186 | 219 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 258 | 289 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 326 | 358 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 359 | 389 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 14 | 34 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 221 | 250 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 258 | 285 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 44 | 78 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 254 | 288 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 149 | 183 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 79 | 113 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 390 | 424 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 184 | 218 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 289 | 323 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 271 | 456 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 148 | 197 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 289 | 337 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 78 | 126 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 359 | 403 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 75 | 165 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 166 | 268 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 324 | 358 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 1 | 74 |
No CAZYmes available for this sequence
| No external refs found! |