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Description : Pentatricopeptide repeat (PPR) superfamily protein
Gene families : OG_01_0006439 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0006439_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Brachypodium distachyon coexpression network - v0.2 (X-meeting 2023): Bradi4g42330.15 | |
| Cluster | Brachypodium distachyon HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_218 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 299 | 333 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 439 | 473 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 544 | 578 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 369 | 403 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 509 | 543 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 575 | 606 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 426 | 482 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 265 | 295 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 649 | 683 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 614 | 648 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 404 | 438 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 267 | 294 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 301 | 335 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 546 | 580 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 511 | 545 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 371 | 404 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 197 | 228 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 651 | 684 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 336 | 369 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 581 | 615 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 616 | 649 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 441 | 475 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 230 | 265 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 407 | 440 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 579 | 613 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 145 | 280 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 281 | 385 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 386 | 489 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 490 | 596 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 597 | 712 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 334 | 368 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 228 | 258 |
| IPR011990 | TPR-like_helical_dom_sf | SUPERFAMILY | 347 | 644 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 613 | 662 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 227 | 278 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 300 | 347 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 509 | 556 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 368 | 417 |
No CAZYmes available for this sequence
| No external refs found! |