Sevir.3G123700.1

Description : DNA binding;ATP binding;nucleic acid binding;binding;helicases;ATP binding;DNA binding;helicases

Gene families : OG_01_0001831 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0001831_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.3G123700.1
Neighborhood	Setaria viridis coexpression network - Anderson et al (2021): Sevir.3G123700.1	No neighbors in network
Cluster	Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_92

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISM	GOs from InterProScan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	ISM	GOs from InterProScan
MF	GO:0005524	ATP binding	ISM	GOs from InterProScan
MF	GO:0008094	ATP-dependent activity, acting on DNA	None	Extended
MF	GO:0008134	transcription factor binding	None	Extended
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATP hydrolysis activity	ISM	GOs from InterProScan
MF	GO:0017025	TBP-class protein binding	ISM	GOs from InterProScan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140296	general transcription initiation factor binding	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:0140658	ATP-dependent chromatin remodeler activity	ISM	GOs from InterProScan
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR027417	P-loop_NTPase	SUPERFAMILY	1690	1985
IPR001650	Helicase_C	SMART	1843	1929
IPR011989	ARM-like	Gene3D	500	745
IPR027417	P-loop_NTPase	Gene3D	1699	2007
IPR011989	ARM-like	Gene3D	1077	1419
IPR014001	Helicase_ATP-bd	SMART	1454	1650
IPR027417	P-loop_NTPase	SUPERFAMILY	1438	1689
IPR021133	HEAT_type_2	ProSiteProfiles	1300	1335
IPR044078	Mot1_ATP-bd	CDD	1458	1689
IPR011989	ARM-like	Gene3D	4	90
IPR022707	Mot1_central_dom	Pfam	786	1240
IPR001650	Helicase_C	ProSiteProfiles	1819	1975
IPR044972	Mot1	PANTHER	1	1979
IPR001650	Helicase_C	Pfam	1827	1929
IPR000357	HEAT	Pfam	1300	1329
IPR014001	Helicase_ATP-bd	ProSiteProfiles	1470	1639
IPR000330	SNF2_N	Pfam	1477	1768
IPR016024	ARM-type_fold	SUPERFAMILY	6	1497
IPR038718	SNF2-like_sf	Gene3D	1428	1688

No CAZYmes available for this sequence

External Links

No external refs found!

Sevir.3G123700.1

Expression Profile

Co-expression Networks

Functional Annotation