Sevir.3G126800.1

Description : RNApolymerase sigma-subunit C

Gene families : OG_01_0006529 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0006529_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.3G126800.1
Neighborhood	Setaria viridis coexpression network - Anderson et al (2021): Sevir.3G126800.1
Cluster	Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_55
Cluster	Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_46

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006352	DNA-templated transcription initiation	ISM	GOs from InterProScan
BP	GO:0006355	regulation of DNA-templated transcription	ISM	GOs from InterProScan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR007630	RNA_pol_sigma70_r4	Pfam	500	553
IPR000943	RNA_pol_sigma70	PRINTS	540	551
IPR000943	RNA_pol_sigma70	PRINTS	504	516
IPR000943	RNA_pol_sigma70	PRINTS	356	369
IPR000943	RNA_pol_sigma70	PRINTS	525	540
IPR000943	RNA_pol_sigma70	PRINTS	380	388
IPR013325	RNA_pol_sigma_r2	SUPERFAMILY	267	400
IPR013324	RNA_pol_sigma_r3/r4-like	SUPERFAMILY	405	478
IPR016262	RNA_pol_sigma_SigB/C/D/F	PIRSF	1	566
IPR007624	RNA_pol_sigma70_r3	Pfam	413	486
IPR014284	RNA_pol_sigma-70_dom	TIGRFAM	329	554
IPR036388	WH-like_DNA-bd_sf	Gene3D	486	566
IPR007627	RNA_pol_sigma70_r2	Pfam	339	396
IPR036388	WH-like_DNA-bd_sf	Gene3D	405	482
IPR013324	RNA_pol_sigma_r3/r4-like	SUPERFAMILY	464	555

No CAZYmes available for this sequence

External Links

No external refs found!

Sevir.3G126800.1

Expression Profile

Co-expression Networks

Functional Annotation