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Description : pentatricopeptide (PPR) repeat-containing protein
Gene families : OG_01_0011753 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0011753_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.3G129100.1 | |
| Neighborhood | Setaria viridis coexpression network - Anderson et al (2021): Sevir.3G129100.1 | |
| Cluster | Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_55 | |
| Cluster | Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_94 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| MF | GO:0008270 | zinc ion binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 242 | 276 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 82 | 218 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 336 | 424 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 280 | 313 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 450 | 483 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 244 | 277 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 551 | 585 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 381 | 413 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 352 | 375 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 152 | 173 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 624 | 646 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 244 | 273 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 277 | 311 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 448 | 482 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 438 | 513 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 219 | 335 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 521 | 743 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 549 | 583 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 378 | 412 |
| IPR032867 | DYW_dom | Pfam | 722 | 846 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 413 | 447 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 141 | 175 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 447 | 495 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 378 | 424 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 276 | 324 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 549 | 595 |
No CAZYmes available for this sequence
| No external refs found! |