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Description : Tetratricopeptide repeat (TPR)-like superfamily protein
Gene families : OG_01_0010643 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0010643_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Brachypodium distachyon coexpression network - v0.2 (X-meeting 2023): Bradi5g01440.1 | |
| Cluster | Brachypodium distachyon HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_28 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| MF | GO:0008270 | zinc ion binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 117 | 151 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 224 | 258 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 617 | 798 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 195 | 215 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 405 | 425 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 89 | 108 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 590 | 618 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 119 | 145 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 554 | 583 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 331 | 357 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 433 | 459 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 526 | 553 |
| IPR032867 | DYW_dom | Pfam | 727 | 851 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 328 | 364 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 552 | 586 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 431 | 465 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 224 | 270 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 13 | 190 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 389 | 502 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 191 | 276 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 507 | 603 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 277 | 388 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 226 | 259 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 331 | 365 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 554 | 584 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 119 | 147 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 403 | 431 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 433 | 459 |
No CAZYmes available for this sequence
| No external refs found! |