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  5. Sevir.1G096200.1

Sevir.1G096200.1


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0010128 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0010128_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.1G096200.1
Neighborhood Setaria viridis coexpression network - Anderson et al (2021): Sevir.1G096200.1
Cluster Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_118
Cluster Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_83


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 548 582
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 618 652
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 350 384
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 241 271
IPR002885 Pentatricopeptide_rpt TIGRFAM 178 202
IPR002885 Pentatricopeptide_rpt TIGRFAM 243 271
IPR002885 Pentatricopeptide_rpt TIGRFAM 586 619
IPR002885 Pentatricopeptide_rpt TIGRFAM 208 242
IPR002885 Pentatricopeptide_rpt TIGRFAM 515 549
IPR002885 Pentatricopeptide_rpt TIGRFAM 458 486
IPR002885 Pentatricopeptide_rpt TIGRFAM 550 583
IPR002885 Pentatricopeptide_rpt TIGRFAM 422 456
IPR002885 Pentatricopeptide_rpt TIGRFAM 318 350
IPR002885 Pentatricopeptide_rpt TIGRFAM 282 312
IPR002885 Pentatricopeptide_rpt TIGRFAM 621 654
IPR002885 Pentatricopeptide_rpt TIGRFAM 387 420
IPR011990 TPR-like_helical_dom_sf Gene3D 500 599
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 455 489
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 206 240
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 385 419
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 144 178
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 420 454
IPR011990 TPR-like_helical_dom_sf Gene3D 16 203
IPR011990 TPR-like_helical_dom_sf Gene3D 378 499
IPR011990 TPR-like_helical_dom_sf Gene3D 684 857
IPR011990 TPR-like_helical_dom_sf Gene3D 274 377
IPR002885 Pentatricopeptide_rpt Pfam 384 431
IPR002885 Pentatricopeptide_rpt Pfam 617 666
IPR002885 Pentatricopeptide_rpt Pfam 206 254
IPR002885 Pentatricopeptide_rpt Pfam 547 594
IPR002885 Pentatricopeptide_rpt Pfam 316 363
IPR002885 Pentatricopeptide_rpt Pfam 140 171
IPR002885 Pentatricopeptide_rpt Pfam 279 308
IPR002885 Pentatricopeptide_rpt Pfam 510 540
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 513 547
IPR002885 Pentatricopeptide_rpt Pfam 726 753
IPR002885 Pentatricopeptide_rpt Pfam 178 203
IPR002885 Pentatricopeptide_rpt Pfam 458 486
IPR011990 TPR-like_helical_dom_sf Gene3D 204 273
IPR011990 TPR-like_helical_dom_sf Gene3D 600 683
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 315 349
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 583 617
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 280 314

No CAZYmes available for this sequence

No external refs found!