Bradi5g07850.5

Description : splicing factor-related

Gene families : OG_01_0006030 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0006030_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brachypodium distachyon coexpression network - v0.2 (X-meeting 2023): Bradi5g07850.5
Cluster	Brachypodium distachyon HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_104

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISM	GOs from InterProScan
MF	GO:0003723	RNA binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0008270	zinc ion binding	ISM	GOs from InterProScan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR036612	KH_dom_type_1_sf	Gene3D	182	310
IPR032570	SF1-HH	Pfam	77	186
IPR036612	KH_dom_type_1_sf	SUPERFAMILY	190	316
IPR001878	Znf_CCHC	SMART	337	353
IPR001878	Znf_CCHC	SMART	311	327
IPR045071	BBP-like	PANTHER	34	690
IPR000504	RRM_dom	Pfam	430	499
IPR045071	BBP-like	PANTHER	693	748
IPR001878	Znf_CCHC	ProSiteProfiles	312	327
IPR000504	RRM_dom	SMART	429	502
IPR036875	Znf_CCHC_sf	SUPERFAMILY	308	354
IPR004087	KH_dom	SMART	190	282
IPR035979	RBD_domain_sf	SUPERFAMILY	424	514
IPR004088	KH_dom_type_1	Pfam	205	278
IPR000504	RRM_dom	ProSiteProfiles	428	506
IPR012677	Nucleotide-bd_a/b_plait_sf	Gene3D	414	511

No CAZYmes available for this sequence

External Links

No external refs found!