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Description : Pentatricopeptide repeat (PPR) superfamily protein
Gene families : OG_01_0014962 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0014962_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Brachypodium distachyon coexpression network - v0.2 (X-meeting 2023): Bradi5g10620.1 | |
| Cluster | Brachypodium distachyon HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_108 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 281 | 315 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 78 | 112 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 3 | 160 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 450 | 484 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 494 | 626 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 210 | 244 |
| IPR011990 | TPR-like_helical_dom_sf | SUPERFAMILY | 186 | 377 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 286 | 313 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 80 | 103 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 492 | 521 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 212 | 246 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 525 | 549 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 112 | 145 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 346 | 374 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 452 | 485 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 342 | 389 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 450 | 496 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 209 | 257 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 343 | 377 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 80 | 103 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 524 | 549 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 424 | 447 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 52 | 74 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 286 | 311 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 262 | 396 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 161 | 261 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 406 | 493 |
No CAZYmes available for this sequence
| No external refs found! |