Sevir.1G010500.1

Description : expansin 11

Gene families : OG_01_0000144 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000144_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.1G010500.1
Neighborhood	Setaria viridis coexpression network - Anderson et al (2021): Sevir.1G010500.1
Cluster	Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_150
Cluster	Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_148

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005576	extracellular region	ISM	GOs from InterProScan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009664	plant-type cell wall organization	ISM	GOs from InterProScan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0045229	external encapsulating structure organization	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	None	Extended
BP	GO:0071669	plant-type cell wall organization or biogenesis	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR036908	RlpA-like_sf	Gene3D	35	169
IPR002963	Expansin	PRINTS	250	266
IPR002963	Expansin	PRINTS	72	86
IPR002963	Expansin	PRINTS	221	242
IPR002963	Expansin	PRINTS	114	124
IPR002963	Expansin	PRINTS	173	185
IPR002963	Expansin	PRINTS	185	206
IPR002963	Expansin	PRINTS	131	148
IPR009009	RlpA-like_DPBB	Pfam	77	164
IPR036908	RlpA-like_sf	SUPERFAMILY	41	192
IPR007117	Expansin_CBD	ProSiteProfiles	184	264
IPR036749	Expansin_CBD_sf	SUPERFAMILY	171	264
IPR002963	Expansin	PANTHER	4	269
IPR007112	Expansin/allergen_DPBB_dom	ProSiteProfiles	60	174
IPR036749	Expansin_CBD_sf	Gene3D	174	269
IPR007112	Expansin/allergen_DPBB_dom	SMART	77	164
IPR007118	Expan_Lol_pI	PRINTS	81	99
IPR007118	Expan_Lol_pI	PRINTS	212	226
IPR007118	Expan_Lol_pI	PRINTS	41	56
IPR007118	Expan_Lol_pI	PRINTS	157	173
IPR007118	Expan_Lol_pI	PRINTS	250	264
IPR007118	Expan_Lol_pI	PRINTS	59	77
IPR007117	Expansin_CBD	Pfam	175	253

No CAZYmes available for this sequence

External Links

No external refs found!