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Description : Pentatricopeptide repeat (PPR) superfamily protein
Gene families : OG_01_0014894 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0014894_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Brachypodium distachyon coexpression network - v0.2 (X-meeting 2023): Bradi5g11010.4 | |
| Cluster | Brachypodium distachyon HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_108 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 458 | 492 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 417 | 538 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 246 | 280 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 352 | 386 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 211 | 245 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 282 | 316 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 274 | 346 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 205 | 273 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 347 | 416 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 319 | 353 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 284 | 318 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 426 | 458 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 354 | 388 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 248 | 282 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 107 | 141 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 460 | 494 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 214 | 247 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 423 | 457 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 281 | 329 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 351 | 400 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 210 | 259 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 424 | 470 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 178 | 201 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 107 | 132 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 317 | 351 |
| IPR011990 | TPR-like_helical_dom_sf | SUPERFAMILY | 102 | 382 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 64 | 204 |
No CAZYmes available for this sequence
| No external refs found! |