Sevir.3G145500.1

Description : RNA binding;GTP binding

Gene families : OG_01_0005224 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0005224_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.3G145500.1
Neighborhood	Setaria viridis coexpression network - Anderson et al (2021): Sevir.3G145500.1
Cluster	Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_144
Cluster	Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_94

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	ISM	GOs from InterProScan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR030388	G_ERA_dom	CDD	114	283
IPR015946	KH_dom-like_a/b	Gene3D	296	410
IPR005225	Small_GTP-bd_dom	TIGRFAM	119	277
IPR004044	KH_dom_type_2	Pfam	319	396
IPR005662	GTPase_Era	Hamap	114	407
IPR006073	GTP-bd	PRINTS	119	139
IPR006073	GTP-bd	PRINTS	168	183
IPR005662	GTPase_Era	PANTHER	74	408
IPR006073	GTP-bd	Pfam	119	236
IPR027417	P-loop_NTPase	Gene3D	110	294
IPR030388	G_ERA_dom	ProSiteProfiles	115	285
IPR009019	KH_sf_prok-type	SUPERFAMILY	293	407
IPR005662	GTPase_Era	TIGRFAM	117	390
IPR027417	P-loop_NTPase	SUPERFAMILY	119	317
IPR004044	KH_dom_type_2	ProSiteProfiles	316	393

No CAZYmes available for this sequence

External Links

No external refs found!