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  5. Bradi5g20040.1

Bradi5g20040.1


Description : Transducin family protein / WD-40 repeat family protein


Gene families : OG_01_0002835 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002835_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium distachyon coexpression network - v0.2 (X-meeting 2023): Bradi5g20040.1
Cluster Brachypodium distachyon HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_236


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
BP GO:0006364 rRNA processing ISM GOs from InterProScan
CC GO:0032040 small-subunit processome ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR001680 WD40_rpt ProSiteProfiles 581 622
IPR001680 WD40_rpt Pfam 538 570
IPR001680 WD40_rpt Pfam 394 434
IPR001680 WD40_rpt Pfam 146 184
IPR001680 WD40_rpt Pfam 103 140
IPR001680 WD40_rpt Pfam 439 477
IPR001680 WD40_rpt Pfam 72 98
IPR001680 WD40_rpt Pfam 189 226
IPR001680 WD40_rpt Pfam 499 529
IPR001680 WD40_rpt Pfam 575 612
IPR001680 WD40_rpt Pfam 618 654
IPR001680 WD40_rpt ProSiteProfiles 108 142
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 157 342
IPR001680 WD40_rpt ProSiteProfiles 623 654
IPR020472 G-protein_beta_WD-40_rep PRINTS 171 185
IPR020472 G-protein_beta_WD-40_rep PRINTS 464 478
IPR020472 G-protein_beta_WD-40_rep PRINTS 421 435
IPR001680 WD40_rpt ProSiteProfiles 497 530
IPR019775 WD40_repeat_CS ProSitePatterns 421 435
IPR013934 Utp13_C Pfam 677 810
IPR001680 WD40_rpt SMART 101 140
IPR001680 WD40_rpt SMART 349 389
IPR001680 WD40_rpt SMART 616 655
IPR001680 WD40_rpt SMART 532 571
IPR001680 WD40_rpt SMART 392 434
IPR001680 WD40_rpt SMART 59 98
IPR001680 WD40_rpt SMART 574 613
IPR001680 WD40_rpt SMART 232 286
IPR001680 WD40_rpt SMART 490 529
IPR001680 WD40_rpt SMART 437 477
IPR001680 WD40_rpt SMART 143 184
IPR001680 WD40_rpt SMART 187 226
IPR001680 WD40_rpt ProSiteProfiles 194 235
IPR001680 WD40_rpt ProSiteProfiles 399 443
IPR001680 WD40_rpt ProSiteProfiles 150 193
IPR019775 WD40_repeat_CS ProSitePatterns 213 227
IPR019775 WD40_repeat_CS ProSitePatterns 127 141
IPR019775 WD40_repeat_CS ProSitePatterns 171 185
IPR001680 WD40_rpt ProSiteProfiles 539 580
IPR036322 WD40_repeat_dom_sf SUPERFAMILY 348 654
IPR001680 WD40_rpt ProSiteProfiles 66 107
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 343 483
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 484 682
IPR036322 WD40_repeat_dom_sf SUPERFAMILY 67 410
IPR001680 WD40_rpt ProSiteProfiles 444 477
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 36 156

No CAZYmes available for this sequence

No external refs found!