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  5. Bradi5g25817.1

Bradi5g25817.1


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0016349 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0016349_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium distachyon coexpression network - v0.2 (X-meeting 2023): Bradi5g25817.1
Cluster Brachypodium distachyon HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_223


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt Pfam 275 297
IPR002885 Pentatricopeptide_rpt Pfam 580 603
IPR002885 Pentatricopeptide_rpt Pfam 303 329
IPR002885 Pentatricopeptide_rpt Pfam 409 437
IPR002885 Pentatricopeptide_rpt Pfam 174 198
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 592 677
IPR002885 Pentatricopeptide_rpt TIGRFAM 510 542
IPR002885 Pentatricopeptide_rpt TIGRFAM 202 235
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 200 234
IPR011990 TPR-like_helical_dom_sf Gene3D 358 456
IPR011990 TPR-like_helical_dom_sf Gene3D 257 357
IPR002885 Pentatricopeptide_rpt Pfam 508 554
IPR002885 Pentatricopeptide_rpt Pfam 200 246
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 542 576
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 507 541
IPR011990 TPR-like_helical_dom_sf Gene3D 457 713
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 406 440
IPR011990 TPR-like_helical_dom_sf Gene3D 152 256

No CAZYmes available for this sequence

No external refs found!