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  5. Bradi5g26670.1

Bradi5g26670.1


Description : pentatricopeptide (PPR) repeat-containing protein


Gene families : OG_01_0009913 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0009913_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium distachyon coexpression network - v0.2 (X-meeting 2023): Bradi5g26670.1
Cluster Brachypodium distachyon HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_128


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISM GOs from InterProScan
MF GO:0003723 RNA binding ISM GOs from InterProScan
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR011990 TPR-like_helical_dom_sf Gene3D 239 405
IPR011990 TPR-like_helical_dom_sf Gene3D 599 717
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 268 302
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 513 547
IPR002885 Pentatricopeptide_rpt Pfam 376 405
IPR002885 Pentatricopeptide_rpt Pfam 555 580
IPR002885 Pentatricopeptide_rpt Pfam 292 347
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 368 758
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 758 792
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 618 652
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 303 337
IPR000504 RRM_dom Pfam 125 182
IPR035979 RBD_domain_sf SUPERFAMILY 115 226
IPR002885 Pentatricopeptide_rpt TIGRFAM 725 758
IPR002885 Pentatricopeptide_rpt TIGRFAM 445 478
IPR002885 Pentatricopeptide_rpt TIGRFAM 516 548
IPR002885 Pentatricopeptide_rpt TIGRFAM 761 794
IPR002885 Pentatricopeptide_rpt TIGRFAM 306 338
IPR002885 Pentatricopeptide_rpt TIGRFAM 481 513
IPR002885 Pentatricopeptide_rpt TIGRFAM 554 583
IPR002885 Pentatricopeptide_rpt TIGRFAM 376 405
IPR002885 Pentatricopeptide_rpt TIGRFAM 586 619
IPR002885 Pentatricopeptide_rpt TIGRFAM 691 724
IPR002885 Pentatricopeptide_rpt TIGRFAM 620 654
IPR002885 Pentatricopeptide_rpt TIGRFAM 274 304
IPR002885 Pentatricopeptide_rpt TIGRFAM 655 688
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 373 407
IPR011990 TPR-like_helical_dom_sf Gene3D 406 494
IPR011990 TPR-like_helical_dom_sf Gene3D 495 598
IPR011990 TPR-like_helical_dom_sf Gene3D 718 840
IPR002885 Pentatricopeptide_rpt Pfam 649 681
IPR002885 Pentatricopeptide_rpt Pfam 509 541
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 443 477
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 723 757
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 653 687
IPR002885 Pentatricopeptide_rpt Pfam 442 489
IPR002885 Pentatricopeptide_rpt Pfam 761 804
IPR002885 Pentatricopeptide_rpt Pfam 687 736
IPR002885 Pentatricopeptide_rpt Pfam 582 630
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 548 582
IPR000504 RRM_dom SMART 124 202
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 583 617
IPR000504 RRM_dom ProSiteProfiles 123 206
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 95 238
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 688 722
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 478 512

No CAZYmes available for this sequence

No external refs found!