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Description : Tetratricopeptide repeat (TPR)-like superfamily protein
Gene families : OG_01_0020725 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0020725_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.3G163100.1 | No neighbors in network |
| Neighborhood | Setaria viridis coexpression network - Anderson et al (2021): Sevir.3G163100.1 | |
| Cluster | Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_54 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 300 | 335 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 195 | 229 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 336 | 370 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 160 | 194 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 232 | 264 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 269 | 300 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 197 | 231 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 339 | 370 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 162 | 196 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 303 | 332 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 194 | 243 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 303 | 348 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 190 | 280 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 230 | 264 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 265 | 299 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 162 | 192 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 269 | 296 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 281 | 432 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 35 | 189 |
No CAZYmes available for this sequence
| No external refs found! |