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  5. Sevir.3G170900.1

Sevir.3G170900.1


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0009973 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0009973_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.3G170900.1
Neighborhood Setaria viridis coexpression network - Anderson et al (2021): Sevir.3G170900.1 No neighbors in network
Cluster Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_32


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 431 465
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 326 360
IPR011990 TPR-like_helical_dom_sf Gene3D 79 244
IPR011990 TPR-like_helical_dom_sf Gene3D 408 592
IPR002885 Pentatricopeptide_rpt Pfam 289 315
IPR002885 Pentatricopeptide_rpt Pfam 252 276
IPR002885 Pentatricopeptide_rpt Pfam 214 240
IPR011990 TPR-like_helical_dom_sf Gene3D 245 322
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 230 363
IPR033443 PPR_long Pfam 408 527
IPR002885 Pentatricopeptide_rpt Pfam 331 372
IPR011990 TPR-like_helical_dom_sf Gene3D 323 395
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 286 320
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 174 209
IPR002885 Pentatricopeptide_rpt TIGRFAM 289 314
IPR002885 Pentatricopeptide_rpt TIGRFAM 329 362
IPR002885 Pentatricopeptide_rpt TIGRFAM 364 393

No CAZYmes available for this sequence

No external refs found!