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Description : Pentatricopeptide repeat (PPR) superfamily protein
Gene families : OG_01_0009670 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0009670_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.1G100900.1 | |
| Neighborhood | Setaria viridis coexpression network - Anderson et al (2021): Sevir.1G100900.1 | |
| Cluster | Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_118 | |
| Cluster | Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_96 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR011990 | TPR-like_helical_dom_sf | SUPERFAMILY | 376 | 518 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 393 | 425 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 605 | 638 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 428 | 459 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 675 | 707 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 859 | 892 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 823 | 856 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 821 | 855 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 676 | 704 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 605 | 635 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 425 | 459 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 603 | 637 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 326 | 500 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 501 | 667 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 139 | 293 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 392 | 438 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 821 | 869 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 856 | 890 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 390 | 424 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 782 | 910 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 668 | 739 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 672 | 706 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 355 | 389 |
No CAZYmes available for this sequence
| No external refs found! |