1. Home
  2. Species
  3. Setaria viridis
  4. Sequence
  5. Sevir.3G179800.1

Sevir.3G179800.1


Description : periodic tryptophan protein 2


Gene families : OG_01_0005355 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0005355_tree

Sequence : cds (download), rna (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.3G179800.1
Neighborhood Setaria viridis coexpression network - Anderson et al (2021): Sevir.3G179800.1
Cluster Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_215
Cluster Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_48


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR001680 WD40_rpt ProSiteProfiles 497 530
IPR019775 WD40_repeat_CS ProSitePatterns 430 444
IPR020472 G-protein_beta_WD-40_rep PRINTS 430 444
IPR020472 G-protein_beta_WD-40_rep PRINTS 516 530
IPR020472 G-protein_beta_WD-40_rep PRINTS 388 402
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 481 666
IPR001680 WD40_rpt ProSiteProfiles 411 452
IPR001680 WD40_rpt ProSiteProfiles 539 580
IPR001680 WD40_rpt Pfam 492 529
IPR001680 WD40_rpt Pfam 134 167
IPR001680 WD40_rpt Pfam 370 400
IPR001680 WD40_rpt Pfam 407 443
IPR001680 WD40_rpt Pfam 542 571
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 284 480
IPR001680 WD40_rpt SMART 84 121
IPR001680 WD40_rpt SMART 131 170
IPR001680 WD40_rpt SMART 43 81
IPR001680 WD40_rpt SMART 490 529
IPR001680 WD40_rpt SMART 594 633
IPR001680 WD40_rpt SMART 319 359
IPR001680 WD40_rpt SMART 362 401
IPR001680 WD40_rpt SMART 404 443
IPR001680 WD40_rpt SMART 277 316
IPR001680 WD40_rpt SMART 533 571
IPR001680 WD40_rpt SMART 702 733
IPR036322 WD40_repeat_dom_sf SUPERFAMILY 19 327
IPR001680 WD40_rpt ProSiteProfiles 369 410
IPR019775 WD40_repeat_CS ProSitePatterns 516 530
IPR027145 PWP2 PANTHER 1 880
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 18 267
IPR007148 SSU_processome_Utp12 Pfam 774 879
IPR011047 Quinoprotein_ADH-like_supfam SUPERFAMILY 206 651

No CAZYmes available for this sequence

No external refs found!