Sevir.1G102900.1

Description : isopropyl malate isomerase large subunit 1

Gene families : OG_01_0005722 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0005722_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.1G102900.1
Neighborhood	Setaria viridis coexpression network - Anderson et al (2021): Sevir.1G102900.1
Cluster	Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_153
Cluster	Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_67

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003861	3-isopropylmalate dehydratase activity	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006520	amino acid metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008652	amino acid biosynthetic process	ISM	GOs from InterProScan
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016053	organic acid biosynthetic process	None	Extended
MF	GO:0016829	lyase activity	None	Extended
MF	GO:0016835	carbon-oxygen lyase activity	None	Extended
MF	GO:0016836	hydro-lyase activity	ISM	GOs from InterProScan
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044283	small molecule biosynthetic process	None	Extended
BP	GO:0046394	carboxylic acid biosynthetic process	None	Extended
MF	GO:0051536	iron-sulfur cluster binding	None	Extended
MF	GO:0051539	4 iron, 4 sulfur cluster binding	ISM	GOs from InterProScan
MF	GO:0051540	metal cluster binding	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR036008	Aconitase_4Fe-4S_dom	SUPERFAMILY	64	507
IPR001030	Acoase/IPM_deHydtase_lsu_aba	Pfam	88	499
IPR006251	Homoacnase/IPMdehydase_lsu	TIGRFAM	68	505
IPR001030	Acoase/IPM_deHydtase_lsu_aba	PRINTS	190	203
IPR001030	Acoase/IPM_deHydtase_lsu_aba	PRINTS	437	450
IPR001030	Acoase/IPM_deHydtase_lsu_aba	PRINTS	204	219
IPR001030	Acoase/IPM_deHydtase_lsu_aba	PRINTS	280	293
IPR001030	Acoase/IPM_deHydtase_lsu_aba	PRINTS	266	279
IPR015931	Acnase/IPM_dHydase_lsu_aba_1/3	Gene3D	349	507
IPR033941	IPMI_cat	CDD	95	501
IPR015931	Acnase/IPM_dHydase_lsu_aba_1/3	Gene3D	68	346

No CAZYmes available for this sequence

External Links

No external refs found!

Sevir.1G102900.1

Expression Profile

Co-expression Networks

Functional Annotation