Sevir.3G238800.1

Description : beta-galactosidase 16

Gene families : OG_01_0000304 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000304_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.3G238800.1
Neighborhood	Setaria viridis coexpression network - Anderson et al (2021): Sevir.3G238800.1
Cluster	Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_178
Cluster	Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_138

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	ISM	GOs from InterProScan
BP	GO:0005975	carbohydrate metabolic process	ISM	GOs from InterProScan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR017853	Glycoside_hydrolase_SF	SUPERFAMILY	25	342
IPR001944	Glycoside_Hdrlase_35	PRINTS	251	266
IPR001944	Glycoside_Hdrlase_35	PRINTS	170	185
IPR001944	Glycoside_Hdrlase_35	PRINTS	615	629
IPR001944	Glycoside_Hdrlase_35	PRINTS	58	76
IPR001944	Glycoside_Hdrlase_35	PRINTS	37	54
IPR001944	Glycoside_Hdrlase_35	PRINTS	308	324
IPR001944	Glycoside_Hdrlase_35	PRINTS	289	304
IPR001944	Glycoside_Hdrlase_35	PRINTS	642	658
IPR001944	Glycoside_Hdrlase_35	PRINTS	113	132
IPR019801	Glyco_hydro_35_CS	ProSitePatterns	172	184
IPR008979	Galactose-bd-like_sf	SUPERFAMILY	581	705
IPR008979	Galactose-bd-like_sf	SUPERFAMILY	402	561
IPR041392	GHD	Pfam	348	418
IPR031330	Gly_Hdrlase_35_cat	Pfam	34	340
IPR001944	Glycoside_Hdrlase_35	PANTHER	16	706

HMM Family	HMM Length	Query Length	e-Value	Query Start	Query End
GH35	307	716	2.5e-110	34	339

External Links

No external refs found!