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  5. Sevir.3G250300.2

Sevir.3G250300.2


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0015724 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0015724_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.3G250300.2 No neighbors in network
Neighborhood Setaria viridis coexpression network - Anderson et al (2021): Sevir.3G250300.2
Cluster Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_12


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR011990 TPR-like_helical_dom_sf Gene3D 1 63
IPR011990 TPR-like_helical_dom_sf Gene3D 84 289
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 9 43
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 145 179
IPR002885 Pentatricopeptide_rpt Pfam 109 157
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 19 271
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 110 144
IPR002885 Pentatricopeptide_rpt Pfam 84 107
IPR002885 Pentatricopeptide_rpt Pfam 183 207
IPR002885 Pentatricopeptide_rpt Pfam 250 275
IPR002885 Pentatricopeptide_rpt Pfam 11 40
IPR002885 Pentatricopeptide_rpt TIGRFAM 148 179
IPR002885 Pentatricopeptide_rpt TIGRFAM 184 208
IPR002885 Pentatricopeptide_rpt TIGRFAM 11 45
IPR002885 Pentatricopeptide_rpt TIGRFAM 112 145

No CAZYmes available for this sequence

No external refs found!