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  5. Sevir.1G110800.1

Sevir.1G110800.1


Description : cold shock domain protein 1


Gene families : OG_01_0006856 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0006856_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.1G110800.1
Neighborhood Setaria viridis coexpression network - Anderson et al (2021): Sevir.1G110800.1
Cluster Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_133
Cluster Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_46


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISM GOs from InterProScan
MF GO:0008270 zinc ion binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR001878 Znf_CCHC ProSiteProfiles 197 210
IPR001878 Znf_CCHC ProSiteProfiles 234 248
IPR001878 Znf_CCHC Pfam 154 170
IPR001878 Znf_CCHC Pfam 196 211
IPR001878 Znf_CCHC Pfam 233 248
IPR001878 Znf_CCHC Pfam 122 138
IPR019844 CSD_1 ProSitePatterns 20 39
IPR002059 CSP_DNA-bd PRINTS 45 63
IPR002059 CSP_DNA-bd PRINTS 9 24
IPR002059 CSP_DNA-bd PRINTS 30 39
IPR011129 CSD SMART 8 73
IPR001878 Znf_CCHC ProSiteProfiles 155 170
IPR036875 Znf_CCHC_sf SUPERFAMILY 117 171
IPR012340 NA-bd_OB-fold SUPERFAMILY 4 72
IPR036875 Znf_CCHC_sf SUPERFAMILY 187 248
IPR001878 Znf_CCHC SMART 233 249
IPR001878 Znf_CCHC SMART 196 212
IPR001878 Znf_CCHC SMART 154 170
IPR001878 Znf_CCHC SMART 122 138
IPR002059 CSP_DNA-bd Pfam 8 72
IPR002059 CSP_DNA-bd ProSiteProfiles 6 72
IPR001878 Znf_CCHC ProSiteProfiles 123 138
IPR002059 CSP_DNA-bd CDD 7 72

No CAZYmes available for this sequence

No external refs found!