Sevir.3G284800.1

Description : NUP50 (Nucleoporin 50 kDa) protein

Gene families : OG_01_0003515 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0003515_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.3G284800.1
Neighborhood	Setaria viridis coexpression network - Anderson et al (2021): Sevir.3G284800.1
Cluster	Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_103
Cluster	Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_66

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005643	nuclear pore	ISM	GOs from InterProScan
BP	GO:0006810	transport	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0046907	intracellular transport	ISM	GOs from InterProScan
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR011993	PH-like_dom_sf	Gene3D	260	440
IPR000156	Ran_bind_dom	ProSiteProfiles	325	438
IPR015007	NUP2/50/61	Pfam	12	70
IPR045207	RanBD_NUP50_plant	CDD	327	441
IPR000156	Ran_bind_dom	SMART	317	440
IPR000156	Ran_bind_dom	Pfam	325	440
IPR045255	RanBP1-like	PANTHER	180	460
IPR045255	RanBP1-like	PANTHER	1	181

No CAZYmes available for this sequence

External Links

No external refs found!