1. Home
  2. Species
  3. Setaria viridis
  4. Sequence
  5. Sevir.3G298100.1

Sevir.3G298100.1


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0007721 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0007721_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.3G298100.1
Neighborhood Setaria viridis coexpression network - Anderson et al (2021): Sevir.3G298100.1
Cluster Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_118
Cluster Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_41


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 642 676
IPR002885 Pentatricopeptide_rpt Pfam 471 515
IPR002885 Pentatricopeptide_rpt Pfam 676 725
IPR002885 Pentatricopeptide_rpt Pfam 307 343
IPR002885 Pentatricopeptide_rpt Pfam 606 651
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 537 571
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 677 711
IPR002885 Pentatricopeptide_rpt Pfam 268 299
IPR002885 Pentatricopeptide_rpt Pfam 163 194
IPR002885 Pentatricopeptide_rpt Pfam 567 598
IPR002885 Pentatricopeptide_rpt Pfam 428 459
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 712 746
IPR011990 TPR-like_helical_dom_sf Gene3D 196 264
IPR011990 TPR-like_helical_dom_sf Gene3D 66 195
IPR011990 TPR-like_helical_dom_sf Gene3D 337 464
IPR011990 TPR-like_helical_dom_sf Gene3D 265 336
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 378 412
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 621 788
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 307 341
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 502 536
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 272 306
IPR002885 Pentatricopeptide_rpt Pfam 206 234
IPR002885 Pentatricopeptide_rpt Pfam 381 407
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 166 196
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 607 641
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 432 466
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 572 606
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 167 267
IPR002885 Pentatricopeptide_rpt TIGRFAM 679 713
IPR002885 Pentatricopeptide_rpt TIGRFAM 470 503
IPR002885 Pentatricopeptide_rpt TIGRFAM 574 602
IPR002885 Pentatricopeptide_rpt TIGRFAM 544 573
IPR002885 Pentatricopeptide_rpt TIGRFAM 381 407
IPR002885 Pentatricopeptide_rpt TIGRFAM 435 465
IPR002885 Pentatricopeptide_rpt TIGRFAM 644 676
IPR002885 Pentatricopeptide_rpt TIGRFAM 504 537
IPR002885 Pentatricopeptide_rpt TIGRFAM 241 272
IPR002885 Pentatricopeptide_rpt TIGRFAM 609 642
IPR002885 Pentatricopeptide_rpt TIGRFAM 275 307
IPR002885 Pentatricopeptide_rpt TIGRFAM 309 343
IPR002885 Pentatricopeptide_rpt TIGRFAM 205 236
IPR002885 Pentatricopeptide_rpt TIGRFAM 168 196
IPR002885 Pentatricopeptide_rpt TIGRFAM 715 747
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 467 501
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 203 237
IPR011990 TPR-like_helical_dom_sf Gene3D 588 673
IPR011990 TPR-like_helical_dom_sf Gene3D 467 587
IPR011990 TPR-like_helical_dom_sf Gene3D 674 789

No CAZYmes available for this sequence

No external refs found!